| Protein: | CNE1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 502 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNE1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..502] | [1..502] |
|
|
0.0 | [26..498] | [64..503] |
|
|
0.0 | [26..498] | [64..503] |
|
|
0.0 | [26..498] | [65..504] |
|
|
0.0 | [26..498] | [65..504] |
|
|
0.0 | [26..498] | [65..504] |
|
Region A: Residues: [1-247] |
1 11 21 31 41 51
| | | | | |
1 MKFSAYLWWL FLNLALVKGT SLLSNVTLAE DSFWEHFQAY TNTKHLNQEW ITSEAVNNEG 60
61 SKIYGAQWRL SQGRLQGSAW DKGIAVRTGN AAAMIGHLLE TPINVSETDT LVVQYEIKLD 120
121 NSLTCGGAFI KLMSGFMNVE ALKHYAPDTE GVELVFGPDY CAPEINGVQF AINKVDKITH 180
181 ESKLRYLQEM PLSKLTDTSQ SHLYTLIIDE SAQSFQILID GKTVMVREHI EDKKKVNFEP 240
241 PITPPLM
|
|
Region B: Residues: [376-502] |
1 11 21 31 41 51
| | | | | |
1 NPLYYEEQHP LRIENVISGV ILEFWSGSPN MLISNIYVGK NVTEAQIIGN KTWLMRDRAF 60
61 RGSDGPTERK FMNSRLGNLQ TTFHNERESP NPFDRIIDRI LEQPLKFVLT AAVVLLTTSV 120
121 LCCVVFT
|
| Detection Method: |  |
| Confidence: | 624.54902 |
| Match: | 1jhnA_ |
| Description: | Calnexin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| complement component C1q binding | 4.81971897425786 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 4.11346029337178 | bayes_pls_golite062009 |
| androgen receptor binding | 3.88449123711676 | bayes_pls_golite062009 |
| zymosan binding | 3.41405218556083 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 3.3517714661273 | bayes_pls_golite062009 |
| binding | 3.24845777545007 | bayes_pls_golite062009 |
| hormone receptor binding | 3.2405597896178 | bayes_pls_golite062009 |
| structural molecule activity | 3.0286932947016 | bayes_pls_golite062009 |
| unfolded protein binding | 2.94586353433162 | bayes_pls_golite062009 |
| protein binding | 2.62442480878692 | bayes_pls_golite062009 |
| transcription regulator activity | 2.5786381493734 | bayes_pls_golite062009 |
| transcription repressor activity | 2.42862869142896 | bayes_pls_golite062009 |
| nucleic acid binding | 2.33705817770533 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.16616430987996 | bayes_pls_golite062009 |
| actin binding | 2.0669297251683 | bayes_pls_golite062009 |
| DNA binding | 2.05388036301171 | bayes_pls_golite062009 |
| carbohydrate binding | 1.90829797790335 | bayes_pls_golite062009 |
| sugar binding | 1.89824804892868 | bayes_pls_golite062009 |
| receptor binding | 1.70102429470678 | bayes_pls_golite062009 |
| molecular transducer activity | 1.69567186252006 | bayes_pls_golite062009 |
| signal transducer activity | 1.69567186252006 | bayes_pls_golite062009 |
| cation binding | 1.67588357161378 | bayes_pls_golite062009 |
| metal ion binding | 1.67588357161378 | bayes_pls_golite062009 |
| ion binding | 1.66900324045723 | bayes_pls_golite062009 |
| NACHT domain binding | 1.53382521801494 | bayes_pls_golite062009 |
| integrin binding | 1.36513827550387 | bayes_pls_golite062009 |
| transporter activity | 1.29150662073327 | bayes_pls_golite062009 |
| chaperone binding | 1.28860282614448 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.25720635817943 | bayes_pls_golite062009 |
| protein complex binding | 1.23240411516711 | bayes_pls_golite062009 |
| RNA binding | 1.22339134958708 | bayes_pls_golite062009 |
| heparin binding | 1.15897181987617 | bayes_pls_golite062009 |
| transcription factor activity | 1.15427978494805 | bayes_pls_golite062009 |
| transcription activator activity | 1.11465354227601 | bayes_pls_golite062009 |
| polysaccharide binding | 1.09475063562581 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.07075219961504 | bayes_pls_golite062009 |
| receptor activity | 0.946182305131481 | bayes_pls_golite062009 |
| growth factor activity | 0.850395354506359 | bayes_pls_golite062009 |
| pattern binding | 0.83687933614214 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.814690646803591 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.801327928563072 | bayes_pls_golite062009 |
| mRNA binding | 0.67699218614597 | bayes_pls_golite062009 |
| monosaccharide binding | 0.5678336426881 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.546870122670733 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 0.52360080681204 | bayes_pls_golite062009 |
| calcium ion binding | 0.416416901481401 | bayes_pls_golite062009 |
| hydrolase activity | 0.374282208763552 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.160855218996334 | bayes_pls_golite062009 |
| growth factor binding | 0.0922754536898114 | bayes_pls_golite062009 |
| cytokine binding | 0.0273545648165503 | bayes_pls_golite062009 |
|
Region A: Residues: [248-375] |
1 11 21 31 41 51
| | | | | |
1 IPDVSVAKPH DWDDRIRIPD PEAVKLSDRD ERDPLMIPHP DGTEPPEWNS SIPEYILDPN 60
61 AQKPSWWKEL EHGEWIPPMI KNPLCTAERG CGQQIPGLIN NAKYKGPGEL NEIINPNYMG 120
121 EWHPPEIE
|
| Detection Method: | |
| Confidence: | 624.54902 |
| Match: | 1jhnA_ |
| Description: | Calnexin |
| Matching Structure (courtesy of the PDB): |
|
