YRC Public Data Repository - Protein Structure Prediction

Protein:	YQ77_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YQ77_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|218201399 - gi\|218201399\|gb\|EEC83826.1\| hypothetical protein OsI_29769 [Oryza sativa Indica Group] gi\|113624129, gi... - gi\|50947329\|ref\|XP_483192.1\| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)], g...	279.0	[0..3]	[281..9]
gi\|39968663, gi\|... - gi\|39968663\|ref\|XP_365722.1\| hypothetical protein MGG_02424 [Magnaporthe grisea 70-15], gb\|EAA54439....	268.0	[0..1]	[275..30]
gi\|46109630, gi\|... - gi\|46109630\|ref\|XP_381873.1\| hypothetical protein FG01697.1 [Gibberella zeae PH-1], gi\|42546151\|gb\|E...	266.0	[0..1]	[282..383]
gi\|42820669 - gi\|42820669\|emb\|CAF31982.1\| hypothetical protein, conserved [Aspergillus fumigatus] gi\|66850269, gi\|... - gi\|70995758\|ref\|XP_752634.1\| zinc metalloproteinase [Aspergillus fumigatus Af293], gi\|66850269\|gb\|EA...	266.0	[0..1]	[258..9]
gi\|9758642 - gi\|9758642\|dbj\|BAB09266.1\| unnamed protein product [Arabidopsis thaliana]	265.0	[0..7]	[279..19]
gi\|67517735, gi\|... - gi\|67517735\|ref\|XP_658653.1\| hypothetical protein AN1049.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	264.0	[0..1]	[252..7]
gi\|32413176, gi\|... - gi\|32413176\|ref\|XP_327068.1\| hypothetical protein [Neurospora crassa], gi\|28925309\|gb\|EAA34387.1\| hy... gi\|85110770 - gi\|85110770\|ref\|XP_963623.1\| hypothetical protein NCU06782 [Neurospora crassa OR74A]	243.0	[0..1]	[277..34]
gi\|115491827, gi... - gi\|115491827\|ref\|XP_001210541.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	241.0	[0..1]	[261..3]
gi\|90301749, gi\|... - gi\|90301749\|gb\|EAS31380.1\| hypothetical protein CIMG_06859 [Coccidioides immitis RS], gi\|119183982\|r...	233.0	[0..3]	[278..21]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKFSCRGN VIALSFNEND TVLDAKEKLG QEIDVSPSLI KLLYKGNLSD DSHLQDVVKN  60
   61 ESKIMCLIRQ DKDIVNQAIS QLKVPDYSTN TYSLKPKKPH TTPKPASIYT F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1oqyA
Description:	Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
SUMO ligase activity	3.84399877513864	bayes_pls_golite062009
small conjugating protein ligase activity	3.47895265760328	bayes_pls_golite062009
ubiquitin-protein ligase activity	2.57856532055016	bayes_pls_golite062009
acid-amino acid ligase activity	2.56275248067993	bayes_pls_golite062009
binding	2.19381585790185	bayes_pls_golite062009
protein tag	2.15059229834935	bayes_pls_golite062009
protein binding	1.61605321739306	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	1.25223828115784	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.536856055841234	bayes_pls_golite062009
kinase activity	0.506057697290914	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.410719674374641	bayes_pls_golite062009
nucleic acid binding	0.383121378043805	bayes_pls_golite062009
protein kinase activity	0.325253662829604	bayes_pls_golite062009
transferase activity	0.236208643697075	bayes_pls_golite062009
DNA binding	0.0840213088061073	bayes_pls_golite062009
transcription regulator activity	0.0485636215870291	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [112-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NELVVLDYPH KDRALRYLER LRDDTGIKKI MDSHRWTVPL LSEMDPAEHT RHDSKTLGLN  60
   61 HNQGAHIELR LRTDR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.657577
Match:	PF08325.1
Description:	No description for PF08325.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [187-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDGFRDYKTV KSTLIHELTH NVHGEHDSSF WELFRQLTKE ADAADLLGKP GSYVSDRASY  60
   61 TPQQDNDDED QKNHRRDLLL AAAERRKQSG SKVQKE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	2ckiA
Description:	No description for 2ckiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: