| Protein: | sv-PD |
| Organism: | Drosophila melanogaster |
| Length: | 680 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sv-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
470.0 | [0..1] | [680..1] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MLIMDIQTST HHIHGLGTHE LQHRILHPHI LHSTQEETLN TSTGQLEHDS QHLQQHHLTH 60
61 HQQQDVSPTL HNLQNTRTGD SLSTTINTNQ NQHGHQHLSG SNMYTSSQME DKSKANKYDE 120
121 YSSRTLSNIS DANTTPSANN FITQSQGIEW ITAMNDIQNG A
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-382] |
1 11 21 31 41 51
| | | | | |
1 EDSHSSQGSI SGDGHGGVNQ LGGVFVNGRP LPDVVRQRIV ELAHNGVRPC DISRQLRVSH 60
61 GCVSKILSRY YETGSFKAGV IGGSKPKVAT PPVVDAIANY KRENPTMFAW EIRDRLLAEA 120
121 ICSQDNVPSV SSINRIVRNK AAEKAKHVHH HQQHHVSQSL GGGHIATESV DSSTGTIGEP 180
181 QPPTSNSSAN SVNTNVSASA SVHASIPTSG TDSVQVSVGH I
|
| Detection Method: | |
| Confidence: | 68.0 |
| Match: | 1k78A |
| Description: | Pax-5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [383-492] |
1 11 21 31 41 51
| | | | | |
1 NANSNETTHI NSTAEQRTTG YSINGILGIQ HGHHSHNNNN NSSVNNNNNT ESSCKRKRIE 60
61 AHDENHDTNI HSDNDDGKRQ RMSTYSGDQL YTNIWSGKWC IKDDHKLLAE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [493-680] |
1 11 21 31 41 51
| | | | | |
1 LGNLTASTGN CPATYYEASN GFSTTPISGS GATASGNDTS MLYDSITTIS QTQSSIYTPA 60
61 IGPSIGTGSL TPLVPISMHE MKLSANSIQE QTVPPFYTGC SSVVPGSDYA YNPAYTQYGG 120
121 AYGSYGYGTG SGLINSSYYY ESGQTQSPLT HDLRSPLVAT RANSLASAAS PGSGSACTKS 180
181 ESSDIFLA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
