| Protein: | gi|19113716 |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 603 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19113716.
| Description | E-value | Query Range |
Subject Range |
|
|
247.0 | [0..2] | [563..6] |
|
|
244.0 | [0..2] | [558..6] |
|
|
243.0 | [0..2] | [573..66] |
|
|
227.0 | [0..2] | [573..64] |
|
|
222.0 | [0..2] | [587..30] |
|
|
219.0 | [0..2] | [603..247] |
|
|
218.0 | [0..2] | [580..19] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MSQNKACDLC RLKKIKCSRG QPRCQTCTLF QADCHYSNRA RRKRLVQRSK ETFGGITLPV 60
61 KNIEKPEDGE ESVQRRLKLL EEKIDLLLDI ATETSEFKRE NKAI
|
| Detection Method: |  |
| Confidence: | 8.39794 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [105-178] |
1 11 21 31 41 51
| | | | | |
1 ELPSLVTQIK DAESIVIKHR QGSPVDNTPT RILNVESLFP PQLPDWEKAF HDIPKKEVAH 60
61 ELVTSYFQHV NWWW
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.301 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.297 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.641 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.276 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.439 | a.50.1 | Anaphylotoxins (complement system) |
|
Region A: Residues: [179-375] |
1 11 21 31 41 51
| | | | | |
1 PTFVYNDFMY EFERLYAFGF HSNNAWLISF YSILALSSIR KRLGNSKTLA ESLFSTAWVF 60
61 VQKSDFFLTP SIDKVQALIV MTQYAAYLSS SSLCRTLCGQ ACLMAQQLNL HRKQSTDVEP 120
121 EKAESWKRIF WMCYILDKNI SLIFGTPSVF NDKDIDCNLP DSKYELLFGV QSGGDLIFVP 180
181 TVSLTIIQSE IRNRLYS
|
| Detection Method: | |
| Confidence: | 34.013228 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [376-603] |
1 11 21 31 41 51
| | | | | |
1 VKSPTQMAAR EKIIIPIHQK LKAWEENLPS EIKMYHEMLL NNTFSPTISL SDRFEFLTFA 60
61 GMEVYFSYLN TLIILHRPSS STENRRICIN AAREAVQLLK NRLNIDLRVN VKADPLWIFL 120
121 YCPFTPFLII FNNLVHETDT ETDSETLLND LDLLHVIYDF FMEMEPVSDV ALELVKIADK 180
181 LLRVAKEVCS AKNNDVTDST FKDIVEGFEL NDLNSWDFDR VTNVMRNL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
