YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157928282, gi...
Organism:	synthetic construct
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157928282, gi....

Description	E-value	Query Range	Subject Range
gi\|73948285 - gi\|73948285\|ref\|XP_533657.2\| PREDICTED: similar to ribosomal protein S19 [Canis familiaris]	280.0	[0..1]	[145..142]
gi\|114677415 - gi\|114677415\|ref\|XP_512692.2\| PREDICTED: similar to ribosomal protein S19 [Pan troglodytes]	276.0	[0..2]	[145..88]
gi\|60653357 - gi\|60653357\|gb\|AAX29373.1\| ribosomal protein S19 [synthetic construct]	273.0	[0..1]	[145..1]
RS19_MOUSE - 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3 RS19_RAT - 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3 gi\|57716 - gi\|57716\|emb\|CAA36003.1\| unnamed protein product [Rattus rattus]	272.0	[0..1]	[145..1]
gi\|62652556, gi\|... - gi\|62652556\|ref\|XP_576285.1\| PREDICTED: similar to 40S ribosomal protein S19 [Rattus norvegicus], gi...	269.0	[0..1]	[145..1]
gi\|16924231 - gi\|16924231\|gb\|AAH17386.1\|AAH17386 ribosomal protein S19 [Homo sapiens]	269.0	[0..2]	[145..14]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGVTVKDVN QQEFVRALAA FLKKSGKLKV PEWVDTVKLA KHKELAPYDE NWFYTRAAST  60
   61 ARHLYLRGGA GVGSMTKIYG GRQRNGVMPS HFSRGSKSVA RRVLQALEGL KMVEKDQDGG 120
  121 RKLTPQGQRD LDRIAGQVAA ANKKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2v7fA
Description:	No description for 2v7fA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	5.29433336630028	bayes_pls_golite062009
structural molecule activity	5.07265721693681	bayes_pls_golite062009
transcription regulator activity	4.44907471960058	bayes_pls_golite062009
nucleic acid binding	3.97631536825798	bayes_pls_golite062009
DNA binding	3.93431504495991	bayes_pls_golite062009
binding	3.52874320222492	bayes_pls_golite062009
transcription factor activity	3.48782936574155	bayes_pls_golite062009
sequence-specific DNA binding	2.44917636781125	bayes_pls_golite062009
transcription activator activity	2.35901958718112	bayes_pls_golite062009
RNA binding	1.88227222208129	bayes_pls_golite062009
protein binding	1.80415286835431	bayes_pls_golite062009
transcription repressor activity	1.54960543048317	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.2152419300113	bayes_pls_golite062009
transcription factor binding	0.13558561552621	bayes_pls_golite062009
ligase activity	0.104213649382856	bayes_pls_golite062009
mRNA binding	0.036043970189533	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: