YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57165728, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57165728, gi|....

Description	E-value	Query Range	Subject Range
gi\|15603313, gi\|... - gi\|15603313\|ref\|NP_246387.1\| hypothetical protein PM1448 [Pasteurella multocida subsp. multocida str...	122.0	[0..1]	[78..498]
gi\|78514742, gi\|... - gi\|78697429\|ref\|ZP_00861936.1\| RNA binding S1:Resolvase, RNase H-like fold [Bradyrhizobium sp. BTAi1...	121.0	[0..1]	[78..629]
gi\|145594251, gi... - gi\|145594251\|ref\|YP_001158548.1\| RNA-binding S1 domain-containing protein [Salinispora tropica CNB-4...	120.0	[0..1]	[78..481]
gi\|89892399 - gi\|89892399\|gb\|ABD78984.1\| HI0568-like protein [Haemophilus influenzae]	120.0	[0..1]	[78..479]
YHGF_HAEIN, Y568... - (P71353) Hypothetical protein HI0568, Uncharacterized protein HI_0568 OS=Haemophilus influenzae GN=H... Y568_HAEIN - Uncharacterized protein HI_0568 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	120.0	[0..1]	[78..479]
gi\|68249168, gi\|... - gi\|68249168\|ref\|YP_248280.1\| transcriptional accessory protein [Haemophilus influenzae 86-028NP], gi...	120.0	[0..1]	[78..479]
gi\|73541033, gi\|... - gi\|73541033\|ref\|YP_295553.1\| RNA binding S1 [Ralstonia eutropha JMP134], gi\|72118446\|gb\|AAZ60709.1\| ...	120.0	[0..1]	[78..509]
gi\|48835190 - ref\|ZP_00292191.1\| COG2183: Transcriptional accessory protein [Thermobifida fusca] gi\|71914236, gi\|... - gi\|72160504\|ref\|YP_288161.1\| RNA binding S1:resolvase, RNase H-like fold [Thermobifida fusca YX], gi...	120.0	[0..1]	[78..480]
gi\|67655741, gi\|... - gi\|67655741\|ref\|ZP_00453126.1\| RNA binding S1 [Burkholderia cenocepacia AU 1054], gi\|67096441\|gb\|EAM... gi\|67667507, gi\|... - gi\|67667507\|ref\|ZP_00464728.1\| RNA binding S1 [Burkholderia cenocepacia HI2424], gi\|67098949\|gb\|EAM1...	120.0	[0..1]	[78..525]
gi\|153950179, gi... - gi\|77631116\|ref\|ZP_00793702.1\| COG2183: Transcriptional accessory protein [Yersinia pseudotuberculos...	119.0	[0..1]	[78..478]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLFLFFA LTAFLFGAVN INTATLKELK SLNGIGEAKA KAILEYRKEA NFTSIDDLKK  60
   61 VKGIGDKLFE KIKNDITIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2oceA
Description:	No description for 2oceA was found.

Predicted functions:

Term	Confidence	Notes
endodeoxyribonuclease activity	1.5110847985227	bayes_pls_golite062009
catalytic activity	1.38775153274716	bayes_pls_golite062009
hydrolase activity	1.34491282133304	bayes_pls_golite062009
deoxyribonuclease activity	1.30372533092482	bayes_pls_golite062009
endonuclease activity	0.806208535404629	bayes_pls_golite062009
DNA helicase activity	0.74632433173141	bayes_pls_golite062009
nuclease activity	0.60752003666333	bayes_pls_golite062009
excinuclease ABC activity	0.58627414236213	bayes_pls_golite062009
binding	0.31593057779343	bayes_pls_golite062009
helicase activity	0.14360375802992	bayes_pls_golite062009
damaged DNA binding	0.0195417646958704	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: