YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|146387702, gi...
Organism:	Escherichia coli
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|146387702, gi....

Description	E-value	Query Range	Subject Range
gi\|85059581, gi\|... - gi\|85059581\|ref\|YP_455283.1\| hypothetical protein SG1603 [Sodalis glossinidius str. 'morsitans'], gi...	215.0	[0..5]	[201..3]
5DNU_PECAS - 5'-deoxynucleotidase ECA3034 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA... Y3034_ERWCT - UPF0207 protein ECA3034 OS=Erwinia carotovora subsp. atroseptica GN=ECA3034 PE=3 SV=1	213.0	[0..5]	[201..3]
5DNU_SHISS - 5'-deoxynucleotidase YfbR OS=Shigella sonnei (strain Ss046) GN=yfbR PE=3 SV=1	212.0	[0..4]	[201..2]
5DNU_ECOL6 - 5'-deoxynucleotidase YfbR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfbR PE=... YFBR_ECOL6 - 5'-nucleotidase yfbR OS=Escherichia coli O6 GN=yfbR PE=3 SV=1 gi\|75259749, gi\|... - gi\|75259749\|ref\|ZP_00731051.1\| COG1896: Predicted hydrolases of HD superfamily [Escherichia coli E22... gi\|190909767, gi... - gi\|75243102\|ref\|ZP_00726808.1\| COG1896: Predicted hydrolases of HD superfamily [Escherichia coli F11... 5DNU_ECOK1 - 5'-deoxynucleotidase YfbR OS=Escherichia coli O1:K1 / APEC GN=yfbR PE=3 SV=1 gi\|194414747, gi... - gi\|75211694\|ref\|ZP_00711773.1\| COG1896: Predicted hydrolases of HD superfamily [Escherichia coli B17... gi\|227835699, gi... - gi\|227887349\|ref\|ZP_04005154.1\| 5'-nucleotidase [Escherichia coli 83972], gi\|227835699\|gb\|EEJ46165.1... gi\|226901133, gi... - gi\|237704767\|ref\|ZP_04535248.1\| yfbR [Escherichia sp. 3_2_53FAA], gi\|226901133\|gb\|EEH87392.1\| yfbR [... 5DNU_ECOL5 - 5'-deoxynucleotidase YfbR OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfbR PE=3 SV=1 5DNU_ECO45 - 5'-deoxynucleotidase YfbR OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfbR PE=3 SV=1 5DNU_ECOUT - 5'-deoxynucleotidase YfbR OS=Escherichia coli (strain UTI89 / UPEC) GN=yfbR PE=3 SV=1 5DNU_ECO81 - 5'-deoxynucleotidase YfbR OS=Escherichia coli O81 (strain ED1a) GN=yfbR PE=3 SV=1	211.0	[0..4]	[201..2]
5DNU_SHIDS - 5'-deoxynucleotidase YfbR OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yfbR PE=3 SV=1	211.0	[0..4]	[201..2]
5DNU_ECOLU - 5'-deoxynucleotidase YfbR OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfbR PE=3 SV=1 gi\|208739475, gi... - gi\|208819352\|ref\|ZP_03259672.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4042], gi\|208739475... gi\|208734590, gi... - gi\|208813313\|ref\|ZP_03254642.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4045], gi\|208734590... 5DNU_ECOSE - 5'-deoxynucleotidase YfbR OS=Escherichia coli (strain SE11) GN=yfbR PE=3 SV=1 5DNU_ECO5E - 5'-deoxynucleotidase YfbR OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfbR PE=3 SV=1 5DNU_ECO8A - 5'-deoxynucleotidase YfbR OS=Escherichia coli O8 (strain IAI1) GN=yfbR PE=3 SV=1 gi\|217327666, gi... - gi\|217327666\|ref\|ZP_03443749.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. TW14588], gi\|21732003... 5DNU_ECO7I - 5'-deoxynucleotidase YfbR OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yfbR PE=3 SV=1 5DNU_ECO55 - 5'-deoxynucleotidase YfbR OS=Escherichia coli (strain 55989 / EAEC) GN=yfbR PE=3 SV=1 gi\|242377924, gi... - gi\|251785651\|ref\|YP_002999955.1\| hypothetical protein B21_02176 [Escherichia coli BL21], gi\|24237792... gi\|253323829, gi... - gi\|254289061\|ref\|YP_003054809.1\| hypothetical protein ECD_02216 [Escherichia coli BL21(DE3)], gi\|253... gi\|253974201, gi... - gi\|254162300\|ref\|YP_003045408.1\| hypothetical protein ECB_02216 [Escherichia coli B str. REL606], gi... gi\|254593583, gi... - gi\|254794183\|ref\|YP_003079020.1\| nucleotidase [Escherichia coli O157:H7 str. TW14359], gi\|254593583\|... 5DNU_ECOLC - 5'-deoxynucleotidase YfbR OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yfbR PE=3 SV... gi\|187771033, gi... - gi\|187771033\|gb\|EDU34877.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4196], gi\|168772981\|ref... gi\|189363026, gi... - gi\|189363026\|gb\|EDU81445.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4486], gi\|168767919\|ref... gi\|124526456, gi... - gi\|124526456\|ref\|ZP_01698409.1\| metal dependent phosphohydrolase [Escherichia coli B], gi\|124501927\|... gi\|168787200, gi... - gi\|189372954\|gb\|EDU91370.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC869], gi\|168787200\|ref\|... gi\|194424819, gi... - gi\|83588274\|ref\|ZP_00926899.1\| COG1896: Predicted hydrolases of HD superfamily [Escherichia coli 101... gi\|189001882, gi... - gi\|189001882\|gb\|EDU70868.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4076], gi\|168780148\|ref... gi\|209765056, gi... - pir\|\|G91025 probable alpha helix protein [imported] - Escherichia coli (strain O157:H7, substrain R... 5DNU_ECOHS - 5'-deoxynucleotidase YfbR OS=Escherichia coli O9:H4 (strain HS) GN=yfbR PE=3 SV=1 5DNU_ECOSM - 5'-deoxynucleotidase YfbR OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfbR PE=3 SV=1 gi\|75512763, gi\|... - gi\|75512763\|ref\|ZP_00735265.1\| COG1896: Predicted hydrolases of HD superfamily [Escherichia coli 536... gi\|168798463, gi... - gi\|189378871\|gb\|EDU97287.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC508], gi\|168798463\|ref\|... 5DNU_ECO57 - 5'-deoxynucleotidase YfbR OS=Escherichia coli O157:H7 GN=yfbR PE=3 SV=1 gi\|208806139, gi... - gi\|208806139\|ref\|ZP_03248476.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4206], gi\|208725940... gi\|12516644, gi\|... - gi\|15802838\|ref\|NP_288865.1\| hypothetical protein Z3552 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|195935669 - gi\|195935669\|ref\|ZP_03081051.1\| hypothetical protein EscherichcoliO157_04282 [Escherichia coli O157:... gi\|15832429, gi\|... - gi\|15832429\|ref\|NP_311202.1\| hypothetical protein ECs3175 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188017214, gi... - gi\|188017214\|gb\|EDU55336.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4113], gi\|168748142\|ref... gi\|168761268, gi... - gi\|189368322\|gb\|EDU86738.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4501], gi\|168761268\|ref... gi\|168755045, gi... - gi\|189357647\|gb\|EDU76066.1\| 5'-nucleotidase [Escherichia coli O157:H7 str. EC4401], gi\|168755045\|ref...	211.0	[0..4]	[201..2]
gi\|77975482 - gi\|77975482\|ref\|ZP_00831017.1\| COG1896: Predicted hydrolases of HD superfamily [Yersinia frederiksen...	211.0	[0..5]	[199..1]
YFBR_ECOLI - 5'-nucleotidase yfbR (EC 3.1.3.5) (Nucleoside 5'-monophosphate phosphohydrolase) (5'-deoxyribonucleo... gi\|85675347, gi\|... - gi\|89109111\|ref\|AP_002891.1\| deoxyribonucleoside 5'-monophosphatase [Escherichia coli str. K-12 subs... 5DNU_ECOBW - 5'-deoxynucleotidase YfbR OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yfbR PE=3 SV=1 5DNU_ECODH - 5'-deoxynucleotidase YfbR OS=Escherichia coli (strain K12 / DH10B) GN=yfbR PE=3 SV=1 EG14102 - 5'-nucleotidase / 5'-nucleotidase; only canonical deoxyribonucleosides used as substrates EG14102 - 5'-nucleotidase / 5'-nucleotidase; only canonical deoxyribonucleosides used as substrates	211.0	[0..4]	[201..2]
gi\|37526980, gi\|... - gi\|37526980\|ref\|NP_930324.1\| hypothetical protein plu3092 [Photorhabdus luminescens subsp. laumondii...	210.0	[0..5]	[200..3]
5DNU_PHOLL - 5'-deoxynucleotidase plu3092 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10... YU92_PHOLL, Y309... - (Q7N2I4) Hypothetical UPF0207 protein plu3092, UPF0207 protein plu3092 OS=Photorhabdus luminescens s...	210.0	[0..5]	[200..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHXKQSHFFA HLSRLKLINR WPLXRNVRTE NVSEHSLQVA XVAHALAAIK NRKFGGNVNA  60
   61 ERIALLAXYH DASEVLTGDL PTPVKYFNSQ IAQEYKAIEK IAQQKLVDXV PEELRDIFAP 120
  121 LIDEHAYSDE EKSLVKQADA LCAYLKCLEE LAAGNNEFLL AKTRLEATLE ARRSQEXDYF 180
  181 XEIFVPSFHL SLDEISQDSP L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2paqA
Description:	No description for 2paqA was found.

Predicted functions:

Term	Confidence	Notes
3',5'-cyclic-nucleotide phosphodiesterase activity	1.78403592992194	bayes_pls_golite062009
cyclic-nucleotide phosphodiesterase activity	1.71333997400312	bayes_pls_golite062009
phosphoric diester hydrolase activity	1.10359416670199	bayes_pls_golite062009
catalytic activity	1.07048165010262	bayes_pls_golite062009
3',5'-cyclic-GMP phosphodiesterase activity	0.481588080325898	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.270250440371143	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.25073971197257	bayes_pls_golite062009
3',5'-cyclic-AMP phosphodiesterase activity	0.192584710344833	bayes_pls_golite062009
hydrolase activity	0.127965587449064	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: