| Protein: | nhr-110 |
| Organism: | Caenorhabditis elegans |
| Length: | 326 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-110.
| Description | E-value | Query Range |
Subject Range |
|
|
219.0 | [0..1] | [325..103] |
|
Region A: Residues: [1-326] |
1 11 21 31 41 51
| | | | | |
1 MSPENIQYDR DKFESILKSS KNNRHLQIPN TVESQLCISP LVSFSNRREK SSKCIDISQI 60
61 VKKAVAKLLN PAMIRNIDST SNLEQLTSGF KNLQSGQKEN IPKIDHITLA HQTQHFNSSM 120
121 CSAAVWLGYS DRFKTYSDMQ KIKVLQAIWC IWGRLEGIVM TAKMRIIGKC EKEQFFLTSD 180
181 TLIVYDNFSS DLDYCSTYPF EEMKYFFIPR EMFHEDVISE LVKVQPDDVE TTYLMSVVCL 240
241 QLTGKRYGGL IQEEMEQFQD ILSNDLHEYY INNKMPKYLL RIKQLMRVKE MFLRNLNIRM 300
301 EKYKIAGVFN VFNRPISNLE FFTVPI
|
| Detection Method: |  |
| Confidence: | 50.09691 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.38569381220638 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.33970394025402 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| nucleic acid binding | 0.843756208408716 | bayes_pls_golite062009 |
| signal transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| molecular transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| transcription factor activity | 0.523911554416 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.14253203697325 | bayes_pls_golite062009 |
| transcription activator activity | 0.0654022419611198 | bayes_pls_golite062009 |
