| Protein: | nhr-154 |
| Organism: | Caenorhabditis elegans |
| Length: | 469 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-154.
| Description | E-value | Query Range |
Subject Range |
|
|
306.0 | [0..4] | [468..370] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MTTFEEFESP STSFNFQTFD RYQPDFKMID YSHQQATHEY HLPDQEVFQN QNEFSASPPD 60
61 ISSPFADEKI YKSLPRNKCP SKCLVCRNPA IGYHYDVPSC NGCKTFFRRT IITGRKFTCA 120
121 KQKKCMDGTE PVDMSKRLCR ACRFAKCVEV GMNPMAIQAE
|
| Detection Method: |  |
| Confidence: | 21.09691 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.55186574506963 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 1.91348392022358 | bayes_pls_golite062009 |
| transcription repressor activity | 1.88834375049208 | bayes_pls_golite062009 |
| hormone receptor binding | 1.8288193687002 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 1.72196998170947 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| androgen receptor binding | 1.48596869620742 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 1.28090460550476 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.61572149323953 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.525229083081488 | bayes_pls_golite062009 |
| structural molecule activity | 0.281585397269403 | bayes_pls_golite062009 |
| receptor activity | 0.230063209127305 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [161-469] |
1 11 21 31 41 51
| | | | | |
1 VKTDEGKVLR SEVLNQRESL GVVSSLIVTE EDLLSRMIEK LTFVESKVEP LHRSGMPPGY 60
61 RDIRKLEEIL DSKPVLVVTD IPNLKFCPSP CANEKRPRRH FTNYVHTSYL ASLESSKMFE 120
121 FSSQLDLESR ILLMKHATLI CSNMMNAFFS INEMKSDILR HPDGSMSGHM RKFDRENDVM 180
181 TDHVKLIQKT LITFLNHKVD KIEYLLFKAI MLCNPAVPGL DSWNQEIIEK ERNQYVKALL 240
241 NYCLLQHGKL QGPTRFATIL AMAPIIENQS KNQKDFHVYI KAKHFQKHKK MGTTFRKCIS 300
301 CMFDQIMET
|
| Detection Method: | |
| Confidence: | 37.0 |
| Match: | 1z5xE |
| Description: | hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A |
Matching Structure (courtesy of the PDB): |
|
