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View Structure Prediction Details

Protein: RET2_MOUSE
Organism: Mus musculus
Length: 134 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RET2_MOUSE.

Description E-value Query
Range		 Subject
Range
gi|114589486 - gi|114589486|ref|XP_001158395.1| PREDICTED: similar to Retinol-binding protein I, cellular (Cellular...
 194.0 [0..1] [133..63]
RET1_RAT - Retinol-binding protein 1 OS=Rattus norvegicus GN=Rbp1 PE=1 SV=2
 178.0 [0..1] [133..1]
RET1_MOUSE - Retinol-binding protein 1 OS=Mus musculus GN=Rbp1 PE=1 SV=2
 178.0 [0..1] [133..1]
CCDS3110.1_1 - null
gi|109049080 - gi|109049080|ref|XP_001113466.1| PREDICTED: retinol binding protein 1, cellular [Macaca mulatta]
 176.0 [0..1] [133..1]
gi|809309, gi|15... - gi|809309|pdb|1CRB| Chain , Cellular Retinol Binding Protein (Crbp) Complexed With All-Trans Retin...
RET1_RAT - (P02696) Retinol-binding protein I, cellular (Cellular retinol-binding protein) (CRBP)
 175.0 [0..2] [133..1]
gi|190690631, gi... - gi|60818267|gb|AAX36457.1| retinol binding protein 1 [synthetic construct], gi|208967296|dbj|BAG7366...
HGNC:9919|MIM:18... - binding protein 1, cellular
ENSPTRT00000028855 - null
RBP1 - retinol binding protein 1, cellular
 174.0 [0..1] [133..1]
gi|60829986 - gi|60829986|gb|AAX36905.1| retinol binding protein 1 [synthetic construct]
 174.0 [0..1] [133..1]
gi|50752060 - gi|50752060|ref|XP_422635.1| PREDICTED: similar to Retinol-binding protein I, cellular (Cellular ret...
 174.0 [0..1] [133..1]

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Predicted Domain #1
Region A:
Residues: [1-134] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDQNGTWE MESNENFEGY MKALDIDFAT RKIAVRLTQT KIITQDGDNF KTKTNSTFRN  60
   61 YDLDFTVGVE FDEHTKGLDG RHVKTLVTWE GNTLVCVQKG EKENRGWKQW VEGDKLYLEL 120
  121 TCGDQVCRQV FKKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1b4mA
Description: NMR STRUCTURE OF APO CELLULAR RETINOL-BINDING PROTEIN II, 24 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
long-chain fatty acid transporter activity 4.03130183716737 bayes_pls_golite062009
retinoid binding 3.86745158299736 bayes_pls_golite062009
isoprenoid binding 3.80802424204178 bayes_pls_golite062009
fatty acid transporter activity 3.78208104687342 bayes_pls_golite062009
retinol binding 3.41359399354212 bayes_pls_golite062009
binding 2.93830472620404 bayes_pls_golite062009
transcription regulator activity 2.27413749831465 bayes_pls_golite062009
lipid transporter activity 1.7304520084656 bayes_pls_golite062009
transcription repressor activity 1.45696778890481 bayes_pls_golite062009
protein binding 1.23450129884619 bayes_pls_golite062009
prostaglandin-D synthase activity 1.18764036773412 bayes_pls_golite062009
lipid binding 1.0002255159651 bayes_pls_golite062009
retinol transporter activity 0.811095267558536 bayes_pls_golite062009
fatty acid binding 0.761923641769607 bayes_pls_golite062009
retinoic acid binding 0.539496110498594 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.50851501669551 bayes_pls_golite062009
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