YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|55726675
Organism: Pongo pygmaeus
Length: 382 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55726675.

Description E-value Query
Range		 Subject
Range
gi|57095276, gi|... - gi|73974252|ref|XP_859004.1| PREDICTED: similar to Vacuolar ATP synthase subunit C (V-ATPase C subun...
 0.0 [1..382] [1..382]
VATC1_BOVIN - V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3
 0.0 [1..382] [1..382]
VATC1_XENTR - V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1 PE=2 SV=1
 0.0 [1..382] [1..382]
VATC1_MOUSE - V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4
 0.0 [1..382] [1..382]
VATC1_XENLA - V-type proton ATPase subunit C 1 OS=Xenopus laevis GN=atp6v1c1 PE=2 SV=1
 0.0 [1..382] [1..382]
gi|55732969|emb|... - hypothetical protein [Pongo pygmaeus]
gi|55732969 - gi|55732969|emb|CAH93171.1| hypothetical protein [Pongo abelii]
 0.0 [1..382] [1..382]
VATC1_RAT - V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1
 0.0 [1..382] [1..382]
VTC1A_DANRE - V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1
 0.0 [1..382] [1..383]

Back

Predicted Domain #1
Region A:
Residues: [1-382] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFWLISAP GEKTCQQTWE KLHAATSKNN NLAVTSKFNI PDLKVGTLDV LVGLSDELAK  60
   61 LDAFVEGVVK KVAQYMADVL EDSKDKVQEN LLANGVDLVT YITRFQWDMA KYPIKQSLKN 120
  121 ISEIIAKGVT QIDNDLKSRA SAYNNLKGNL QNLERKNAGS LLTRSLAEIV KKDDFVLDSE 180
  181 YLVTLLVVVP KLNHNDWIKQ YETLAEMVVP RSSNVLSEDQ DSYLCNVTLF RKAVDDFRHK 240
  241 ARENKFIVRD FQYNEEEMKA DKEEMNRLST DKKKQFGPLV RWLKVNFSEA FIAWIHVKAL 300
  301 RVFVESVLRY GLPVNFQAML LQPNKKTLKK LREVLHELYK HLDSSAAAII DAPMDIPGLN 360
  361 LSQQEYYPYV YYKIDCNLLE FK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 122.0
Match: 1u7lA
Description: Crystal Structure of subunit C (vma5p) of the yeast V-ATPase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transmembrane transporter activity 12.3352255617459 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 10.5863459521035 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 9.47957751673845 bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism 8.04670314838796 bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism 7.25165353297621 bayes_pls_golite062009
cation-transporting ATPase activity 5.95289483482599 bayes_pls_golite062009
cation transmembrane transporter activity 5.74889738890923 bayes_pls_golite062009
ion transmembrane transporter activity 5.64669396672268 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.22844923180027 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 4.07961473146848 bayes_pls_golite062009
transporter activity 3.46526113720851 bayes_pls_golite062009
transmembrane transporter activity 3.37048202892137 bayes_pls_golite062009
substrate-specific transporter activity 3.36986693191031 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism 3.01531981010483 bayes_pls_golite062009
primary active transmembrane transporter activity 2.60440013485447 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 2.60069637398921 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 2.58215499145116 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 2.57906484106374 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 2.57862595121731 bayes_pls_golite062009
active transmembrane transporter activity 2.50524643368579 bayes_pls_golite062009
hydrolase activity 2.11429056985835 bayes_pls_golite062009
ATPase activity, coupled 1.96367406225153 bayes_pls_golite062009
nucleoside-triphosphatase activity 1.76379885224229 bayes_pls_golite062009
pyrophosphatase activity 1.69566510056354 bayes_pls_golite062009
ATPase activity 1.69439936736892 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.67811565012269 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.67577649087358 bayes_pls_golite062009
binding 1.5759873319504 bayes_pls_golite062009
catalytic activity 0.902495165806215 bayes_pls_golite062009
protein binding 0.458389541110755 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle