YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21465659, gi\|...
Organism:	Bos taurus
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21465659, gi|....

Description	E-value	Query Range	Subject Range
gi\|116283481 - gi\|116283481\|gb\|AAH14999.1\| PSMA7 protein [Homo sapiens]	6.0E-70	[1..238]	[1..238]
gi\|74145096 - gi\|74145096\|dbj\|BAE27417.1\| unnamed protein product [Mus musculus]	2.0E-69	[1..230]	[1..230]
gi\|34860906, gi\|... - gi\|62646494\|ref\|XP_579184.1\| PREDICTED: proteasome (prosome, macropain) subunit, alpha type 7 [Rattu...	7.0E-69	[1..230]	[1..230]
PSA7_BOVIN - Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1	8.0E-69	[1..230]	[1..230]
gi\|61373076, gi\|... - gi\|61373078\|gb\|AAX43973.1\| proteasome subunit alpha type 7 [synthetic construct], gi\|61373076\|gb\|AAX...	1.0E-67	[1..230]	[1..230]
PSA7B_XENLA - Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-b PE=2 SV=1	1.0E-67	[1..230]	[1..230]
PSA7A_XENLA - Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-a PE=2 SV=1 gi\|89268296, gi\|... - gi\|89268296\|emb\|CAJ83094.1\| proteasome (prosome macropain) subunit alpha type7 [Xenopus tropicalis],...	2.0E-67	[1..230]	[1..230]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYDRAITVF SPDGHLFQVE YAQEAVKKGS TAVGVRGRDI VVLGVEKKSV AKLQDERTVR  60
   61 KICALDDNVC MAFAGLTADA RIVINRARVE CQSHRLTVED PVTVEYITRY IASLKQRYTQ 120
  121 SNGRRPFGIS ALIVGFDFDG TPRLYQTDPS GTYHAWKANA IGRGAKSVRE FLEKNYTDEA 180
  181 IETDDLTIKL VIKALLEVVQ SGGKNIELAV MRRDQSLKIL NPEEIEKYVA EIEKEKEENE 240
  241 KKKQKKAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.09691
Match:	1iruD
Description:	Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
endopeptidase activity	6.91642761177919	bayes_pls_golite062009
peptidase activity	6.84511694091156	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	6.5973571808298	bayes_pls_golite062009
hydrolase activity	4.47652590304822	bayes_pls_golite062009
threonine-type endopeptidase activity	2.98214579292788	bayes_pls_golite062009
threonine-type peptidase activity	2.98214579292788	bayes_pls_golite062009
binding	1.75265921676176	bayes_pls_golite062009
nucleic acid binding	1.39216781236247	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: