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View Structure Prediction Details

Protein: gi|149025685, gi...
Organism: Rattus norvegicus
Length: 241 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149025685, gi....

Description E-value Query
Range		 Subject
Range
gi|218186097 - gi|218186097|gb|EEC68524.1| hypothetical protein OsI_36813 [Oryza sativa Indica Group]
PSA5_ORYSJ - Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1
PSA5_ORYSA - Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha subunit E) (20S proteasome subun...
 7.0E-72 [1..241] [1..237]
PSA5A_ARATH - Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1
 6.0E-71 [1..241] [1..237]
gi|1498589 - gi|1498589|gb|AAB93421.1| 20S proteasome alpha subunit PSMA5 [Drosophila melanogaster]
 7.0E-71 [1..241] [1..243]
gi|74141404 - gi|74141404|dbj|BAE35982.1| unnamed protein product [Mus musculus]
 2.0E-70 [1..241] [1..241]
gi|88168 - gi|88168|pir||S17521 proteasome endopeptidase complex (EC 3.4.25.1) zeta chain - human
 2.0E-70 [1..241] [1..241]
PSA5_SOYBN - Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1
 2.0E-70 [1..241] [1..237]
gi|45387823, gi|... - gi|47938031|gb|AAH71495.1| Proteasome (prosome, macropain) subunit, alpha type,5 [Danio rerio], gi|4...
 3.0E-70 [1..241] [1..241]
gi|47227266 - gi|47227266|emb|CAF96815.1| unnamed protein product [Tetraodon nigroviridis]
 4.0E-70 [1..241] [1..241]

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Predicted Domain #1
Region A:
Residues: [1-241] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLTRSEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGI QTSEGVCLAV EKRITSPLME  60
   61 PSSIEKIVEI DAHIGCAMSG LIADAKTLID KARVETQNHW FTYNETMTVE SVTQAVSNLA 120
  121 LQFGEEDADP GAMSRPFGVA LLFGGVDEKG PQLFHMDPSG TFVQCDARAI GSASEGAQSS 180
  181 LQEVYHKSMT LKEAIKSSLI ILKQVMEEKL NATNIELATV QPGQNFHMFT KEELEEVIKD 240
  241 I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 1iruE
Description: Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
endopeptidase activity 6.91642761177919 bayes_pls_golite062009
peptidase activity 6.84511694091156 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 6.5973571808298 bayes_pls_golite062009
hydrolase activity 4.47652590304822 bayes_pls_golite062009
threonine-type endopeptidase activity 2.98214579292788 bayes_pls_golite062009
threonine-type peptidase activity 2.98214579292788 bayes_pls_golite062009
catalytic activity 1.19663085909195 bayes_pls_golite062009
binding 0.982918122186083 bayes_pls_golite062009
nucleic acid binding 0.448212653390607 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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