YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25300199, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25300199, gi|....

Description	E-value	Query Range	Subject Range
gi\|30088584 - gi\|30088584\|gb\|AAN35158.1\| beta-tubulin [Nowakowskiella elegans]	0.0	[2..356]	[21..387]
TBB2_HOMAM - Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1	0.0	[9..372]	[48..423]
gi\|63333579 - gi\|63333579\|gb\|AAY40445.1\| beta-tubulin [Rhizophydium sphaerotheca]	0.0	[2..356]	[21..387]
gi\|4098333 - gi\|4098333\|gb\|AAD10493.1\| beta-tubulin 6 [Triticum aestivum]	0.0	[7..372]	[37..414]
TBB1_MAIZE - Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1	0.0	[2..372]	[36..418]
gi\|167518193, gi... - gi\|167518193\|ref\|XP_001743437.1\| beta tubulin [Monosiga brevicollis MX1], gi\|163778536\|gb\|EDQ92151.1... gi\|16554292 - gi\|16554292\|gb\|AAK27411.1\| beta-tubulin [Monosiga brevicollis]	0.0	[2..372]	[36..418]
gi\|30995481 - gi\|30995481\|gb\|AAO59417.2\| beta-tubulin [Schistosoma japonicum]	0.0	[2..372]	[36..418]
betaTub56D-PA - The gene Ã?Ã?Â²-Tubulin at 56D is referred to in FlyBase by the symbol Dmel\Ã?Ã?Â²Tub56D...	0.0	[2..372]	[45..427]
gi\|77023508 - gi\|77023508\|gb\|ABA61129.1\| beta tubulin [Verticillium tricorpus]	0.0	[2..372]	[36..418]
gi\|74003992 - gi\|74003992\|ref\|XP_535868.2\| PREDICTED: similar to tubulin, beta 2 [Canis familiaris]	0.0	[2..372]	[134..516]

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Predicted Domain #1

Region A:
Residues: [1-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEPMELTND AVITVIGVGG GGGNAVEHMV RERIEGVEFF AVNTDAQALR KTAVGQTIQI  60
   61 GSGITKGLGA GANPEVGRNA ADEDREALRA ALEGADMVFI AAGMGGGTGT GAAPVVAEVA 120
  121 KDLGILTVAV VTKPFNFEGK KRMAFAEQGI TELSKHVDSL ITIPNDKLLK VLGRGISLLD 180
  181 AFGAANDVLK GAVQGIAELI TRPGLMNVDF ADVRTVMSEM GYAMMGSGVA SGEDRAEEAA 240
  241 EMAISSPLLE DIDLSGARGV LVNITAGFDL RLDEFETVGN TIRAFASDNA TVVIGTSLDP 300
  301 DMNDELRVTV VATGIGMDKR PEITLVTNKQ VQQPVLDRYQ QHGMAPLTQE QKTVAKVVND 360
  361 NAPQAAKEPD YLDIPAFLRK QAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2vawA
Description:	No description for 2vawA was found.

Predicted functions:

Term	Confidence	Notes
GTPase activity	0.71911442300442	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.53372418527133	bayes_pls_golite062009
pyrophosphatase activity	0.49744292198201	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.48757264517201	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.48725609330932	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: