YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: sptl-1
Organism: Caenorhabditis elegans
Length: 434 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sptl-1.

Description E-value Query
Range
Subject
Range
gi|202860 - gi|202860|gb|AAA40724.1| delta-aminolevulinate synthase precursor (EC 2.3.1.37)
322.0 [0..5] [433..185]

Back

Predicted Domain #1
Region A:
Residues: [1-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNRSKRQQE KLSKKLTERQ KDELIADWTP EPLVPETPQD HPVLNPKYAD GKMTKDVSID  60
   61 GEKYLNMAST NFLSFIGVKR IEDRAKQTIF KYGVGSCGPR GFYGTVDVHL DLEKELAKFM 120
  121 GCEEAVLYSY GFATVSSAIP AYAKKGDVIF VDEGVNFAIQ KGLQASRSRV EYFKHNDMEH 180
  181 LERLLLEQEQ RDKKDPKKAK SVRRFIVVEG LYVNYADLCP LPKIIEFKWR FKVRVFIDES 240
  241 WSFGVIGKTG RGVTEHFNVP MEDVDMVMAS LENALASTGG FCVGRSYVVG HQRLSGLGYC 300
  301 FSASLPPLLA TAASEAISII DEEPSRVQKV TEMAINGQKK LQDALSGSKF SLQGCPESPM 360
  361 KHIYYNGEDE EKQLDTFVET VFTKNHLLLT RARYLDKDEL FKIRPSIRVM FQHDLTEEEI 420
  421 QRAVDAIRVV AHKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.522879
Match: 1fc4A
Description: 2-amino-3-ketobutyrate CoA ligase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
serine C-palmitoyltransferase activity 9.1839236553858 bayes_pls_golite062009
C-palmitoyltransferase activity 9.1839236553858 bayes_pls_golite062009
C-acyltransferase activity 4.29379571948906 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 1.08684392183114 bayes_pls_golite062009
transcription regulator activity 1.07873942461292 bayes_pls_golite062009
DNA binding 0.886628214497634 bayes_pls_golite062009
nucleic acid binding 0.814403324199462 bayes_pls_golite062009
structural molecule activity 0.811208803619077 bayes_pls_golite062009
transferase activity 0.737426388870721 bayes_pls_golite062009
binding 0.661198018681765 bayes_pls_golite062009
transcription factor activity 0.615294010373048 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle