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View Structure Prediction Details

Protein: gi|50912359, gi|...
Organism: Oryza sativa Japonica Group
Length: 674 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50912359, gi|....

Description E-value Query
Range
Subject
Range
gi|169754815, gi... - gi|170019887|ref|YP_001724841.1| protease 4 [Escherichia coli ATCC 8739], gi|169754815|gb|ACA77514.1...
gi|124529954, gi... - gi|124529954|ref|ZP_01700766.1| signal peptide peptidase SppA, 67K type [Escherichia coli B], gi|124...
gi|157161228, gi... - gi|75195834|ref|ZP_00705904.1| COG0616: Periplasmic serine proteases (ClpP class) [Escherichia coli ...
420.0 [0..77] [669..2]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLLVLRSA PYHRSHLSAT ATFLLSPSNS KHPHSASASA SFPSTARRIL LPSPLRVPAR  60
   61 AIESSPGTTK QEPTPAAGEG EAQEPPPPAA SAFEVEELGW GTQLAVKLR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAPPWKRV RKGSVLNMKL RGEISDQLKT RFSSGLSLPQ ICENFVKAAY DPRISGIYLH  60
   61 IEPLRCGWGK VDEIRRHIVD FKKSGKFVVG YMPVCGEKEY YLACACGELY APPSAYVALF 120
  121 GLTVQQTFLR GVLEKVGIEP EIQRIGRYKS AGDQLARKSM SNEVREMLAT LLDNIYGNWL 180
  181 DTISSKHGKK KEEIEEFINS GVYQVARLKE EG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 2deoA
Description: No description for 2deoA was found.

Predicted Domain #3
Region A:
Residues: [322-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WITDLLYDDE VMAMLKERVA QKDKKSLRMV DYSKYSRVSK WTLGLQGGGE QIAVIRASGS  60
   61 ITRTRSPLSV PSSGIIAEQL IEKIRTVRES EKYKAVILRI DSPGGDALAS DLMWREIRLL 120
  121 ADTKPVVASM SDVAASGGYY MAMAAPVIVA EKLTLTGSIG VVTGKFILQK LYERIDFNKE 180
  181 IISKGRYAEL NAADQRPLRP DEAELFEKSA QNAYALFRDK AAMSRSMNVD QMETVAQGRV 240
  241 WSGQDAASRG LVDSLG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 1tyfA
Description: Clp protease, ClpP subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.83198156728699 bayes_pls_golite062009
hydrolase activity 0.0572242329620312 bayes_pls_golite062009
ligase activity 0.0513867906493599 bayes_pls_golite062009
peptidase activity 0.0169889411806907 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [578-674]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFSQALAIAK QKANIPHDRK VQLVEISKPS PTLPEILSGI GSSLLGVDRA VKGVLQDVTS  60
   61 LNGVQARMDG ILFERLEDLS GENQLLLLVK DIVNYFD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle