| Protein: | gi|32490269, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 659 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|32490269, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
522.0 | [0..30] | [653..2] |
|
Region A: Residues: [1-208] |
1 11 21 31 41 51
| | | | | |
1 MAAQMAAVAV NGGSPGAVTA AAAAGGVGVA VGLGGGGAQS LYVGDLEASV TDSQLYELFS 60
61 QAGQVMSVRV CRDISSRRSL GYAYVNFNNP VDAARALELL NFAPLNGKPI RVMYSNRDPS 120
121 SRRSGSANIF IKNLDKAIDH KTLHDTFSAF GNILSCKVAT DEMGQSKGFG FVQYDKGEAA 180
181 QSAIKSLNGM LINDKPVYVG PFLRKQER
|
| Detection Method: |  |
| Confidence: | 53.30103 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [209-316] |
1 11 21 31 41 51
| | | | | |
1 ENSVDKTKFN NVFVKNLSES TTKEDLVKIF GAYGNITSAV IMVGMDGKSR CFGFINFKSP 60
61 DDAARAVEEL NGKKINDKEW YVGRAQKKSE REIELKRRFE QSMKDAAD
|
| Detection Method: | |
| Confidence: | 5.19 |
| Match: | 2do0A |
| Description: | No description for 2do0A was found. |
|
Region A: Residues: [317-397] |
1 11 21 31 41 51
| | | | | |
1 KYQGLNLYMK NLDDSIGDDQ LCELFSNYGK ITSCKIMRDA NGVSKGSGFV AFSTREEASQ 60
61 ALTEMNGKMI SGKPLYVAFA Q
|
| Detection Method: | |
| Confidence: | 17.30103 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
|
Region A: Residues: [398-502] |
1 11 21 31 41 51
| | | | | |
1 RKEDRKAMLQ AQFSQVRPVP MTPSMAPRLP MYPPMAPLGQ QLFYGQAPPA IMPPQPGFGF 60
61 QQQLVPGMRP GGAHMPNYFV PVVQQGQQGP RPGIRRSGAG SAQGQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [503-659] |
1 11 21 31 41 51
| | | | | |
1 QSAQPFQQQM LPRGRVYRYP PAHNMPDVPP MPGVAGGMIQ SYDMGGFPVR DAGLSPAPIG 60
61 TLTSALANAN PEQQRTILGE SLYPLVELLE QNHAAKVTGM LLEMDQTEVL HLLESPEALK 120
121 SKVAEAMDVL RNVAQQHNAN TPTSQLAALS LGDAIIS
|
| Detection Method: | |
| Confidence: | 28.39794 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.69788763665792 | bayes_pls_golite062009 |
| mRNA binding | 5.31297072316889 | bayes_pls_golite062009 |
| single-stranded RNA binding | 4.51056428709072 | bayes_pls_golite062009 |
| nucleic acid binding | 3.78909647605682 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 3.4111148675327 | bayes_pls_golite062009 |
| binding | 2.76167454154417 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.20136693536924 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.19350242454642 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.14692713780316 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.223805219849164 | bayes_pls_golite062009 |
