YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16331500, gi\|...
Organism:	Synechocystis sp. PCC 6803
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16331500, gi|....

Description	E-value	Query Range	Subject Range
gi\|91774335, gi\|... - gi\|91774335\|ref\|YP_567027.1\| pyruvate carboxylase subunit A [Methanococcoides burtonii DSM 6242], gi...	504.0	[0..2]	[445..1]
gi\|18144735, gi\|... - gi\|18310056\|ref\|NP_561990.1\| biotin carboxylase [Clostridium perfringens str. 13], gi\|18144735\|dbj\|B...	497.0	[0..2]	[446..1]
gi\|46119399, gi\|... - gi\|67923410\|ref\|ZP_00516889.1\| Acetyl-CoA carboxylase, biotin carboxylase [Crocosphaera watsonii WH ...	496.0	[0..1]	[448..2]
gi\|168210766, gi... - gi\|170711212\|gb\|EDT23394.1\| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens B st... gi\|110799124, gi... - gi\|110799124\|ref\|YP_695776.1\| biotin carboxylase [Clostridium perfringens ATCC 13124], gi\|110673771\|...	494.0	[0..2]	[446..1]
gi\|110682664, gi... - gi\|110802163\|ref\|YP_698464.1\| biotin carboxylase [Clostridium perfringens SM101], gi\|110682664\|gb\|AB...	493.0	[0..2]	[446..1]
gi\|86608860, gi\|... - gi\|86608860\|ref\|YP_477622.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus sp. JA... gi\|86608860 - gi\|86608860\|ref\|YP_477622.1\| acetyl-CoA carboxylase, biotin carboxylase [Cyanobacteria bacterium Yel...	493.0	[0..3]	[448..4]
gi\|87301340, gi\|... - gi\|87301340\|ref\|ZP_01084181.1\| acetyl-CoA carboxylase [Synechococcus sp. WH 5701], gi\|87284308\|gb\|EA...	492.0	[0..1]	[448..1]
gi\|78168294, gi\|... - gi\|78184000\|ref\|YP_376435.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus sp. CC...	492.0	[0..1]	[448..1]
gi\|78711946, gi\|... - gi\|78778447\|ref\|YP_396559.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus mari...	492.0	[0..2]	[448..1]
gi\|116066787, gi... - gi\|116071382\|ref\|ZP_01468651.1\| acetyl-CoA carboxylase [Synechococcus sp. BL107], gi\|116066787\|gb\|EA...	491.0	[0..1]	[448..1]

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Predicted Domain #1

Region A:
Residues: [1-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFAKILIAN RGEIALRIIH SCEELGIPTV AVHSTIDRHA LHVQLANESV CIGPPPSNKS  60
   61 YLNIPNIIAA ALTRNATAIH PGYGFLAENA RFAEICADHQ ITFIGPSPEA ITAMGDKSTA 120
  121 KKTMQKSGVP CVPGSPGLIE SEATALKIAA EIGYPVIIKA TAGGGGRGMR LVQEEKDFLK 180
  181 LFHAAQGEAG AAFGNPGVYL EKFIEKPRHI EFQILADSHG NVVHLGERDC SIQRRHQKLL 240
  241 EEAPSPFLTP HLRKKMGEAA VKAAKSINYV GAGTVEFLVD GNGNFYFMEM NTRIQVEHPV 300
  301 TEMITGYDLI SEQIRIAMGE KLRFRQSDVE IRGHAIECRI NAEDPKQNFR PHPGKISAYL 360
  361 PPGGPGVRID SHVYTDYEIP PYYDSLIGKL IVWAGDRPSA IKRMQRALRE CAITGVPTTL 420
  421 EFHQRILQTP AFLAGDVYTN FIEEHLTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	126.0
Match:	1ulzA
Description:	Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA carboxylase activity	9.83581323285097	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	9.81059565938621	bayes_pls_golite062009
acetyl-CoA carboxylase activity	9.76633430002009	bayes_pls_golite062009
ligase activity	7.71401892529536	bayes_pls_golite062009
biotin carboxylase activity	6.9547407447638	bayes_pls_golite062009
carbamoyl-phosphate synthase activity	4.25267317906061	bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	4.17451795830682	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	3.45358843752722	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
phosphoribosylaminoimidazole carboxylase activity	1.57708889650281	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.11645327303429	bayes_pls_golite062009
phosphoribosylamine-glycine ligase activity	1.04915286326924	bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds	0.695070201354335	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: