YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253517, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253517, gi|....

Description	E-value	Query Range	Subject Range
gi\|229181735, gi... - gi\|229181735\|ref\|ZP_04309058.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus 1725... DNAA_BACC4 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain B4264) GN=dnaA PE=3 SV=1 gi\|206970479, gi... - gi\|206970479\|ref\|ZP_03231432.1\| chromosomal replication initiator protein DnaA [Bacillus cereus AH11... DNAA_BACCR - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ... gi\|228835452, gi... - gi\|228924234\|ref\|ZP_04087505.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|229051158, gi... - gi\|229051158\|ref\|ZP_04194702.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH67... gi\|229072954, gi... - gi\|229072954\|ref\|ZP_04206150.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus F651... gi\|228955739, gi... - gi\|228955739\|ref\|ZP_04117734.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228797947, gi... - gi\|228961753\|ref\|ZP_04123356.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228635464, gi... - gi\|229148039\|ref\|ZP_04276378.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... gi\|228629834, gi... - gi\|229153648\|ref\|ZP_04281824.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus m155... gi\|229112902, gi... - gi\|229112902\|ref\|ZP_04242433.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock... gi\|229130735, gi... - gi\|229130735\|ref\|ZP_04259688.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD...	1.0E-73	[1..441]	[1..441]
gi\|228583782, gi... - gi\|229199687\|ref\|ZP_04326330.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus m129... DNAA_BACC1 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=d... gi\|229142238, gi... - gi\|229142238\|ref\|ZP_04270762.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... DNAA_BACCQ - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain Q1) GN=dnaA PE=3 SV=1 DNAA_BACC7 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain AH187) GN=dnaA PE=3 SV=1 gi\|206745871, gi... - gi\|206975777\|ref\|ZP_03236688.1\| chromosomal replication initiator protein DnaA [Bacillus cereus H308...	4.0E-73	[1..446]	[1..446]
gi\|75761786, gi\|... - gi\|75761786\|ref\|ZP_00741721.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiensi...	4.0E-72	[1..428]	[20..447]
DNAA_BACCN - Chromosomal replication initiator protein DnaA OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 11004...	8.0E-72	[1..446]	[1..446]
gi\|221317065 - gi\|221317065\|ref\|ZP_03598359.1\| chromosomal replication initiation protein [Bacillus subtilis subsp.... gi\|221312132 - gi\|221312132\|ref\|ZP_03593937.1\| chromosomal replication initiation protein [Bacillus subtilis subsp.... gi\|221321328 - gi\|221321328\|ref\|ZP_03602622.1\| chromosomal replication initiation protein [Bacillus subtilis subsp.... DNAA_BACSU - Chromosomal replication initiator protein DnaA OS=Bacillus subtilis GN=dnaA PE=1 SV=1 DNAA_BACSU - Chromosomal replication initiator protein DnaA OS=Bacillus subtilis (strain 168) GN=dnaA PE=1 SV=1	7.0E-71	[1..446]	[1..446]
gi\|23193191 - gi\|23193191\|gb\|AAN14420.1\|AF319579_1 DnaA [Bacillus weihenstephanensis] DNAA_BACWK - Chromosomal replication initiator protein DnaA OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaA... gi\|228746667, gi... - gi\|229014656\|ref\|ZP_04171770.1\| Chromosomal replication initiator protein dnaA [Bacillus mycoides DS... gi\|228716178, gi... - gi\|229065149\|ref\|ZP_04200442.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH60... gi\|229136315, gi... - gi\|229136315\|ref\|ZP_04265062.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... gi\|229170193, gi... - gi\|229170193\|ref\|ZP_04297879.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH62...	1.0E-70	[1..446]	[1..446]
gi\|17428542 - gi\|17428542\|emb\|CAD15228.1\| probable atp-dependent zinc metallopeptidase (cell division ftsh) transm... gi\|17546245 - gi\|17546245\|ref\|NP_519647.1\| ATP-dependent zinc metallopeptidase [Ralstonia solanacearum GMI1000]	2.0E-70	[102..444]	[138..505]
DNAA_BACLD - Chromosomal replication initiator protein DnaA OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13...	2.0E-70	[1..446]	[1..446]
gi\|207742906, gi... - gi\|207742906\|ref\|YP_002259298.1\| atp-dependent zinc metallopeptidase (cell division protein ftsh) [R... gi\|83747762, gi\|... - gi\|83747762\|ref\|ZP_00944796.1\| Cell division protein ftsH [Ralstonia solanacearum UW551], gi\|8372553... gi\|207723996, gi... - gi\|207723996\|ref\|YP_002254394.1\| atp-dependent zinc metallopeptidase (cell division protein ftsh) [R...	2.0E-70	[102..444]	[138..505]
gi\|83575348, gi\|... - gi\|83592434\|ref\|YP_426186.1\| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum ATCC 11...	3.0E-70	[102..444]	[139..508]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENISDLWNS ALKELEKKVS KPSYETWLKS TTAHNLKKDV LTITAPNEFA RDWLESHYSE  60
   61 LISETLYDLT GAKLAIRFII PQSQAEEEID LPPAKPNAAQ D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	1ny5A
Description:	Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	5.01388683093589	bayes_pls_golite062009
signal transducer activity	3.71287818091202	bayes_pls_golite062009
molecular transducer activity	3.71287818091202	bayes_pls_golite062009
DNA binding	2.77608903097616	bayes_pls_golite062009
nucleic acid binding	2.60508662944966	bayes_pls_golite062009
two-component response regulator activity	2.59441224418158	bayes_pls_golite062009
transcription factor activity	2.01247028577327	bayes_pls_golite062009
binding	1.66253490279439	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [102-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSNHLPQSML NPKYTFDTFV IGSGNRFAHA ASLAVAEAPA KAYNPLFIYG GVGLGKTHLM  60
   61 HAIGHYVIEH NPNAKVVYLS SEKFTNEFIN SIRDNKAVDF RNKYRNVDVL LIDDIQFLAG 120
  121 KEQTQEEFFH TFNALHEESK QIVISSDRPP KEIPTLEDRL RSRFEWGLIT DITPPDLETR 180
  181 IAILRKKAKA EGLDIPNEVM LYIANQIDSN IRELEGALIR VVAYSSLINK DINADLAAEA 240
  241 LKDIIPNSKP KIISIYDIQK AVGDVYQVKL EDFKAKKRTK SVAFPRQIAM YLSRELTDSS 300
  301 LPKIGEEFGG RDHTTVIHAH EKISKLLKTD TQLQKQVEEI NDILK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	2hcbA
Description:	No description for 2hcbA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.7440092435568	bayes_pls_golite062009
pyrophosphatase activity	1.24473801560965	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
nucleic acid binding	0.835083234340837	bayes_pls_golite062009
DNA binding	0.482861189033644	bayes_pls_golite062009
transcription regulator activity	0.313784136616883	bayes_pls_golite062009
helicase activity	0.113520297233174	bayes_pls_golite062009
DNA-dependent ATPase activity	0.0863785441153608	bayes_pls_golite062009
nucleotide binding	0.0188404002299471	bayes_pls_golite062009
purine nucleotide binding	0.0142207617615038	bayes_pls_golite062009
purine ribonucleotide binding	0.00410396371520677	bayes_pls_golite062009
ribonucleotide binding	0.0038904924070306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: