YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260280, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260280, gi|....

Description	E-value	Query Range	Subject Range
gi\|229329189, gi... - gi\|229499910\|ref\|ZP_04393587.1\| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC52], gi\|229329189\|g... SYC_GEOKA - Cysteinyl-tRNA synthetase OS=Geobacillus kaustophilus GN=cysS PE=3 SV=1 SYC_GEOKA - Cysteine--tRNA ligase OS=Geobacillus kaustophilus (strain HTA426) GN=cysS PE=3 SV=1 gi\|221089302, gi... - gi\|221089302\|ref\|ZP_03558822.1\| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC61], gi\|220706728\|g...	0.0	[2..465]	[3..466]
SYC_OCEIH - Cysteine--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831... SYC_OCEIH - Cysteinyl-tRNA synthetase OS=Oceanobacillus iheyensis GN=cysS PE=3 SV=1	0.0	[1..465]	[1..467]
SYC_BACLD - Cysteine--tRNA ligase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 ...	0.0	[1..465]	[1..465]
SYC_BACC1 - Cysteine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=cysS PE=3 SV=1	0.0	[1..465]	[1..465]
SYC_GEOSL - Cysteinyl-tRNA synthetase OS=Geobacter sulfurreducens GN=cysS PE=3 SV=1 SYC_GEOSL - Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=cysS PE=3...	0.0	[1..463]	[1..479]
SYC_GEOMG - Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=cysS PE...	0.0	[1..463]	[1..483]
gi\|47553517, gi\|... - gi\|47569824\|ref\|ZP_00240494.1\| cysteinyl-tRNA synthetase [Bacillus cereus G9241], gi\|47553517\|gb\|EAL...	0.0	[1..465]	[1..465]
SYC_BACHD - Cysteine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153... SYC_BACHD - Cysteinyl-tRNA synthetase OS=Bacillus halodurans GN=cysS PE=3 SV=1	1.0E-99	[1..465]	[1..465]
SYC_BACWK - Cysteine--tRNA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=cysS PE=3 SV=1	2.0E-99	[1..465]	[1..465]
SYC_BACCN - Cysteine--tRNA ligase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) ...	2.0E-99	[1..465]	[1..465]

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Predicted Domain #1

Region A:
Residues: [1-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIHIYNTLT RQKEEFTPLE ENKVKMYVCG PTVYNYIHIG NARPPMVFDT VRRYLEYKGY  60
   61 DVQYVSNFTD VDDKLIKAAN ELGEDVPTIA DRFVEAYFED VTALGCKHAT VHPRVTENMD 120
  121 IIIEFIQELV NKGYAYESEG DVYFRTKEFE GYGKLSHQPI ADLRHGARIE VGEKKQDPLD 180
  181 FALWKAAKEG EIFWESPWGQ GRPGWHIECS AMARKYLGDT IDIHAGGQDL AFPHHENEIA 240
  241 QSEALTGKTF ARYWMHNGYI NINNEKMSKS LGNFILVHDI IKQYDPQLIR FFMLSVHYRH 300
  301 PINFSEELLQ STNNGLERIK TAYGNLKHRM ESSTDLTDHN EKWLADLEKF QTAFEEAMND 360
  361 DFNTANAITE LYNVANHANQ YLLEEHTSTV VIEAYVKQLE TLFDILGLEL AQEELLDEEI 420
  421 EALIQKRIEA RKNRDFALSD QIRDDLKDRN IILEDTAQGT RWKRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.30103
Match:	1li5A
Description:	Cysteinyl-tRNA synthetase (CysRS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
cysteine-tRNA ligase activity	5.23703961447809	bayes_pls_golite062009
isoleucine-tRNA ligase activity	3.76808520367507	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
methionine-tRNA ligase activity	2.01261843164558	bayes_pls_golite062009
tyrosine-tRNA ligase activity	1.88984817882585	bayes_pls_golite062009
tryptophan-tRNA ligase activity	1.14187887833901	bayes_pls_golite062009
arginine-tRNA ligase activity	1.13743634264647	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009
nucleic acid binding	0.161799496958314	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.126511747475258	bayes_pls_golite062009
glutamine-tRNA ligase activity	0.118292082006187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: