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View Structure Prediction Details

Protein: gi|30264044, gi|...
Organism: Bacillus anthracis str. Ames
Length: 371 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264044, gi|....

Description E-value Query
Range
Subject
Range
gi|116872446, gi... - gi|116872446|ref|YP_849227.1| pyruvate dehydrogenase alpha subunit [Listeria welshimeri serovar 6b s...
gi|254933400, gi... - gi|254933400|ref|ZP_05266759.1| pyruvate dehydrogenase (E1 alpha subunit) [Listeria monocytogenes HP...
gi|254823675 - gi|254823675|ref|ZP_05228676.1| pyruvate dehydrogenase (E1 alpha subunit) [Listeria monocytogenes FS...
gi|153166387, gi... - gi|153166387|ref|ZP_01926973.1| pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase...
gi|226223670, gi... - gi|226223670|ref|YP_002757777.1| pyruvate dehydrogenase (E1 alpha subunit) [Listeria monocytogenes C...
gi|254880077 - gi|254880077|ref|ZP_05252787.1| pyruvate dehydrogenase (E1 alpha subunit) [Listeria monocytogenes FS...
gi|254853061 - gi|254853061|ref|ZP_05242409.1| pyruvate dehydrogenase (E1 alpha subunit) [Listeria monocytogenes FS...
gi|16800113 - gi|16800113|ref|NP_470381.1| hypothetical protein lin1044 [Listeria innocua Clip11262]
gi|25284413, gi|... - pir||AC1563 pyruvate dehydrogenase (E1 alpha chain) homolog pdhA [imported] - Listeria innocua (stra...
gi|46907284, gi|... - gi|46907284|ref|YP_013673.1| pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase al...
8.0E-74 [1..371] [1..371]
gi|255028745 - gi|255028745|ref|ZP_05300696.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|255027445 - gi|255027445|ref|ZP_05299431.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|254873306 - gi|254873306|ref|ZP_05246016.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|47015490, gi|... - gi|47096141|ref|ZP_00233741.1| pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase ...
gi|16803092 - gi|16803092|ref|NP_464577.1| hypothetical protein lmo1052 [Listeria monocytogenes EGD-e]
gi|284994526|ref... - hypothetical protein LM5923_1089 [Listeria monocytogenes 08-5923]
gi|254898775, gi... - gi|254898775|ref|ZP_05258699.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|16410454, gi|... - pir||AD1206 pyruvate dehydrogenase (E1 alpha chain) homolog pdhA [imported] - Listeria monocytogenes...
gi|127634131, gi... - gi|254830179|ref|ZP_05234834.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|153190463, gi... - gi|254911736|ref|ZP_05261748.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|153174118, gi... - gi|254828429|ref|ZP_05233116.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|254936062, gi... - gi|254936062|ref|ZP_05267759.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|217964855, gi... - gi|217964855|ref|YP_002350533.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyt...
gi|224502634 - gi|224502634|ref|ZP_03670941.1| pyruvate dehydrogenase E1 component subunit alpha [Listeria monocyto...
gi|290893797|ref... - pyruvate dehydrogenase complex [Listeria monocytogenes FSL J2-071]
gi|284801384|ref... - hypothetical protein LM5578_1135 [Listeria monocytogenes 08-5578]
9.0E-74 [1..371] [1..371]
gi|56379435, gi|... - gi|56419593|ref|YP_146911.1| dehydrogenase E1 component, alpha subunit (lipoamide) [Geobacillus kaus...
2.0E-73 [1..371] [1..369]
gi|72495520, gi|... - gi|73663005|ref|YP_301786.1| pyruvate dehydrogenase E1 component alpha subunit [Staphylococcus sapro...
4.0E-72 [5..371] [4..370]
gi|70726860, gi|... - gi|70726860|ref|YP_253774.1| pyrubate dehydrogenase E1 component alpha subunit [Staphylococcus haemo...
4.0E-72 [5..371] [4..370]
gi|154685875, gi... - gi|92012070|emb|CAJ57405.1| pyruvate dehydrogenase (E1 alpha subunit) [Bacillus amyloliquefaciens FZ...
6.0E-72 [1..371] [1..371]
gi|52080059, gi|... - gi|52785434|ref|YP_091263.1| PdhA [Bacillus licheniformis ATCC 14580], gi|52347936|gb|AAU40570.1| Pd...
9.0E-72 [1..371] [1..371]
gi|257795176|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus A978...
ODPA_STAAN - Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain N315) GN=pdhA PE=...
ODPA_STAAW - Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3...
gi|258451960|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus A5948]
gi|282925277|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus A976...
gi|87202350, gi|... - gi|88194792|ref|YP_499589.1| pyruvate dehydrogenase complex, E1 component, alpha subunit, putative [...
ODPA_STAAM - Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 70069...
gi|87126728, gi|... - gi|87160754|ref|YP_493691.1| pyruvate dehydrogenase E1 component, alpha subunit [Staphylococcus aure...
gi|258421793|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus A971...
gi|151221171, gi... - gi|151221171|ref|YP_001331993.1| pyruvate dehydrogenase E1 component, alpha subunit [Staphylococcus ...
gi|156721551, gi... - gi|156979416|ref|YP_001441675.1| pyrubate dehydrogenase E1 component alpha subunit [Staphylococcus a...
gi|269202704|ref... - pyruvate dehydrogenase complex E1 component, alpha subunit [Staphylococcus aureus subsp. aureus ED98...
gi|258449861|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus A6224]
ODPA_STAAC - Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain COL) GN=pdhA PE=3...
gi|262052201|ref... - pyruvate dehydrogenase E1 component alpha subunit [Staphylococcus aureus 930918-3]
gi|283770155|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus subsp. aureus H19]
gi|282894120|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus A811...
gi|255005880 - gi|255005880|ref|ZP_05144481.2| pyruvate dehydrogenase E1 component, alpha subunit [Staphylococcus a...
gi|253733672, gi... - gi|253733672|ref|ZP_04867837.1| pyruvate dehydrogenase E1 component alpha subunit [Staphylococcus au...
gi|87160754|ref|... - pyruvate dehydrogenase E1 component, alpha subunit [Staphylococcus aureus subsp. aureus USA300], pyr...
gi|253731704, gi... - gi|253731704|ref|ZP_04865869.1| pyruvate dehydrogenase E1 component alpha subunit [Staphylococcus au...
gi|258407115|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus A9763]
gi|253316346 - gi|253316346|ref|ZP_04839559.1| pyruvate dehydrogenase E1 component, alpha subunit [Staphylococcus a...
gi|251802448, gi... - gi|251813995|ref|ZP_04828468.1| pyruvate dehydrogenase E1 component alpha subunit [Staphylococcus au...
gi|161509276, gi... - gi|161509276|ref|YP_001574935.1| pyruvate dehydrogenase (acetyl-transferring) alpha subunit [Staphyl...
gi|258444964|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus A6300]
gi|90583640, gi|... - gi|90583640|ref|ZP_01239393.1| Pyruvate dehydrogenase (lipoamide) [Staphylococcus aureus subsp. aure...
gi|221138711 - gi|221138711|ref|ZP_03563513.1| pyruvate dehydrogenase (acetyl-transferring) alpha subunit [Staphylo...
gi|90430363, gi|... - gi|90586087|ref|ZP_01241790.1| Dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus JH9]...
gi|221140507 - gi|221140507|ref|ZP_03565000.1| pyruvate dehydrogenase (acetyl-transferring) alpha subunit [Staphylo...
gi|258443354|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus A8115]
gi|284024018|ref... - pyruvate dehydrogenase complex E1 component, alpha subunit [Staphylococcus aureus subsp. aureus 132]
gi|258454960|ref... - pyruvate dehydrogenase complex E1 component [Staphylococcus aureus A5937]
gi|282916343|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
gi|282928615|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus A101...
ODPA_STAAS - Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA ...
gi|258436157|ref... - pyruvate dehydrogenase E1 component [Staphylococcus aureus A9299]
2.0E-71 [5..371] [4..370]
ODPA_GEOSE - Pyruvate dehydrogenase E1 component subunit alpha OS=Geobacillus stearothermophilus GN=pdhA PE=1 SV=...
2.0E-71 [1..371] [1..369]
gi|257427808|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus subsp. aureus 65-1322]
gi|227558697, gi... - gi|227558697|ref|ZP_03988744.1| pyruvate dehydrogenase E1 component, alpha subunit [Staphylococcus a...
gi|227851134, gi... - gi|227900484|ref|ZP_04018289.1| pyruvate dehydrogenase E1 component, alpha subunit [Staphylococcus a...
gi|282913868|ref... - pyruvate dehydrogenase complex E1 component, alpha subunit [Staphylococcus aureus subsp. aureus M899...
gi|257433145|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus subsp. aureus E1410]
gi|293500905|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
ODPA_STAAR - Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA ...
gi|282918792|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
gi|282905411|ref... - pyruvate dehydrogenase acetyl-transferring E1 component alpha subunit [Staphylococcus aureus subsp. ...
gi|293526447|ref... - pyruvate dehydrogenase complex E1 component, alpha subunit [Staphylococcus aureus subsp. aureus M101...
gi|282910670|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
gi|257425145|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus subsp. aureus 55/2053]
gi|257430443|ref... - pyruvate dehydrogenase E1 component subunit alpha [Staphylococcus aureus subsp. aureus 68-397]
gi|282923914|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
gi|293509861|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
gi|282908383|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
gi|283957837|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
gi|257436044|ref... - pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Staphylococcus aureus subs...
4.0E-71 [5..371] [4..370]

Back

Predicted Domain #1
Region A:
Residues: [1-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTKTKKTLF NVDEQMKAIA AQFETLQILN EKGEVVNEAA MPELSDDQLK ELMRRMVYTR  60
   61 VLDQRSISLN RQGRLGFYAP TAGQEASQLA SHFALEAEDF ILPGYRDVPQ LVWHGLPLYQ 120
  121 AFLFSRGHFM GNQMPENVNA LAPQIIIGAQ IIQTAGVALG MKLRGKKSVA ITYTGDGGAS 180
  181 QGDFYEGMNF AGAFKAPAIF VVQNNRYAIS TPVEKQSAAK TVAQKAVAAG IYGIQVDGMD 240
  241 PLAVYAATAF ARERAVNGEG PTLIETLTFR YGPHTMAGDD PTRYRTKDIE NEWEQKDPIV 300
  301 RFRAFLENKG LWSQEVEEKV IEEAKEDIKQ AIAKADQAPK QKVTDLMEIM YEKMPYNLAE 360
  361 QYEIYKEKES K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.522879
Match: 1w88A
Description: The crystal structure of pyruvate deydrogenase E1(D180N,E183Q) bound to the peripheral subunit binding domain of E2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
pyruvate dehydrogenase activity 11.3856674722026 bayes_pls_golite062009
pyruvate dehydrogenase (acetyl-transferring) activity 11.0549577473177 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 10.8180381281695 bayes_pls_golite062009
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity 7.00951713446616 bayes_pls_golite062009
alpha-ketoacid dehydrogenase activity 6.25236550086321 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 4.89064211833637 bayes_pls_golite062009
acetolactate synthase activity 4.51986503762195 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 3.8269109174531 bayes_pls_golite062009
2-oxoisovalerate dehydrogenase (acylating) activity 3.00128844859152 bayes_pls_golite062009
cyclin-dependent protein kinase 5 activator regulator activity 3.00128844859152 bayes_pls_golite062009
catalytic activity 2.25537597692103 bayes_pls_golite062009
oxidoreductase activity 1.85833680148029 bayes_pls_golite062009
transketolase activity 1.53492491341322 bayes_pls_golite062009
protein binding 0.992849906276347 bayes_pls_golite062009
binding 0.750068469698571 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 0.667418924427388 bayes_pls_golite062009
pyruvate decarboxylase activity 0.198062360371269 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle