YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264517, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264517, gi|....

Description	E-value	Query Range	Subject Range
gi\|218899617, gi... - gi\|218899617\|ref\|YP_002448028.1\| septum site-determining protein MinD [Bacillus cereus G9842], gi\|21... gi\|228902978, gi... - gi\|228902978\|ref\|ZP_04067118.1\| Septum site-determining protein minD [Bacillus thuringiensis IBL 422... gi\|228849344, gi... - gi\|228910284\|ref\|ZP_04074101.1\| Septum site-determining protein minD [Bacillus thuringiensis IBL 200... gi\|228923202, gi... - gi\|228923202\|ref\|ZP_04086492.1\| Septum site-determining protein minD [Bacillus thuringiensis serovar... gi\|228941616, gi... - gi\|228941616\|ref\|ZP_04104163.1\| Septum site-determining protein minD [Bacillus thuringiensis serovar... gi\|29898081, gi\|... - gi\|30022523\|ref\|NP_834154.1\| cell division inhibitor MinD [Bacillus cereus ATCC 14579], gi\|29898081\|... gi\|228804930, gi... - gi\|228954732\|ref\|ZP_04116754.1\| Septum site-determining protein minD [Bacillus thuringiensis serovar... gi\|228960725, gi... - gi\|228960725\|ref\|ZP_04122364.1\| Septum site-determining protein minD [Bacillus thuringiensis serovar... gi\|228967530, gi... - gi\|228967530\|ref\|ZP_04128557.1\| Septum site-determining protein minD [Bacillus thuringiensis serovar... gi\|206969671, gi... - gi\|206969671\|ref\|ZP_03230625.1\| septum site-determining protein MinD [Bacillus cereus AH1134], gi\|20... gi\|228974545, gi... - gi\|228974545\|ref\|ZP_04135111.1\| Septum site-determining protein minD [Bacillus thuringiensis serovar... gi\|218236122, gi... - gi\|218236122\|ref\|YP_002369256.1\| septum site-determining protein MinD [Bacillus cereus B4264], gi\|21... gi\|228981140, gi... - gi\|228981140\|ref\|ZP_04141440.1\| Septum site-determining protein minD [Bacillus thuringiensis Bt407],... gi\|229048161, gi... - gi\|229048161\|ref\|ZP_04193730.1\| Septum site-determining protein minD [Bacillus cereus AH676], gi\|228... gi\|229071958, gi... - gi\|229071958\|ref\|ZP_04205168.1\| Septum site-determining protein minD [Bacillus cereus F65185], gi\|22... gi\|229081714, gi... - gi\|229081714\|ref\|ZP_04214207.1\| Septum site-determining protein minD [Bacillus cereus Rock4-2], gi\|2... gi\|229111920, gi... - gi\|229111920\|ref\|ZP_04241464.1\| Septum site-determining protein minD [Bacillus cereus Rock1-15], gi\|... gi\|228653844, gi... - gi\|229129727\|ref\|ZP_04258695.1\| Septum site-determining protein minD [Bacillus cereus BDRD-Cer4], gi... gi\|229147019, gi... - gi\|229147019\|ref\|ZP_04275379.1\| Septum site-determining protein minD [Bacillus cereus BDRD-ST24], gi... gi\|229152651, gi... - gi\|229152651\|ref\|ZP_04280839.1\| Septum site-determining protein minD [Bacillus cereus m1550], gi\|228... gi\|228602703, gi... - gi\|229180725\|ref\|ZP_04308063.1\| Septum site-determining protein minD [Bacillus cereus 172560W], gi\|2... gi\|74489294, gi\|... - gi\|75763220\|ref\|ZP_00742981.1\| Cell division inhibitor MinD [Bacillus thuringiensis serovar israelen... gi\|229192660, gi... - gi\|229192660\|ref\|ZP_04319619.1\| Septum site-determining protein minD [Bacillus cereus ATCC 10876], g...	6.0E-56	[1..265]	[1..265]
gi\|228584860, gi... - gi\|229198578\|ref\|ZP_04325280.1\| Septum site-determining protein minD [Bacillus cereus m1293], gi\|228... gi\|42739515, gi\|... - gi\|42783586\|ref\|NP_980833.1\| septum site-determining protein MinD [Bacillus cereus ATCC 10987], gi\|4...	8.0E-56	[1..265]	[1..265]
gi\|229019674, gi... - gi\|229019674\|ref\|ZP_04176481.1\| Septum site-determining protein minD [Bacillus cereus AH1273], gi\|22... gi\|228747586, gi... - gi\|229013664\|ref\|ZP_04170793.1\| Septum site-determining protein minD [Bacillus mycoides DSM 2048], g... gi\|228717126, gi... - gi\|229062143\|ref\|ZP_04199467.1\| Septum site-determining protein minD [Bacillus cereus AH603], gi\|228... gi\|229025911, gi... - gi\|229025911\|ref\|ZP_04182305.1\| Septum site-determining protein minD [Bacillus cereus AH1272], gi\|22... gi\|163942197, gi... - gi\|89205249\|ref\|ZP_01183820.1\| Septum site-determining protein MinD [Bacillus weihenstephanensis KBA... gi\|229169191, gi... - gi\|229169191\|ref\|ZP_04296905.1\| Septum site-determining protein minD [Bacillus cereus AH621], gi\|228... gi\|229135274, gi... - gi\|229135274\|ref\|ZP_04264070.1\| Septum site-determining protein minD [Bacillus cereus BDRD-ST196], g...	1.0E-55	[1..265]	[1..265]
gi\|56421148, gi\|... - gi\|56421148\|ref\|YP_148466.1\| ATPase involved in chromosome partitioning [Geobacillus kaustophilus HT...	1.0E-55	[1..265]	[1..267]
gi\|152025616, gi... - gi\|89200291\|ref\|ZP_01179045.1\| Septum site-determining protein MinD [Bacillus cereus subsp. cytotoxi...	1.0E-55	[1..265]	[1..265]
gi\|88999671 - gi\|88999671\|emb\|CAJ75591.1\| minD protein [Geobacillus thermoleovorans]	9.0E-55	[1..265]	[3..269]
gi\|78043338, gi\|... - gi\|78043338\|ref\|YP_359211.1\| septum site-determining protein MinD [Carboxydothermus hydrogenoformans...	4.0E-54	[1..263]	[1..261]
gi\|28204129, gi\|... - gi\|28211687\|ref\|NP_782631.1\| septum site-determining protein minD [Clostridium tetani E88], gi\|28204...	7.0E-54	[1..263]	[1..263]
gi\|89086378, gi\|... - gi\|89098974\|ref\|ZP_01171854.1\| ATPase activator of MinC [Bacillus sp. NRRL B-14911], gi\|89086378\|gb\|...	2.0E-53	[1..265]	[1..267]
gi\|20807384 - gi\|20807384\|ref\|NP_622555.1\| Septum formation inhibitor-activating ATPase [Thermoanaerobacter tengco... gi\|20807384, gi\|... - gi\|20807384\|ref\|NP_622555.1\| septum formation inhibitor-activating ATPase [Thermoanaerobacter tengco...	2.0E-53	[1..263]	[1..262]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEAIVITSG KGGVGKTTTS ANIGTALALS GKKVCLIDTD IGLRNLDVVM GLENRIVFDL  60
   61 VDVVEGRCRL PQALIKDKRF DDLYLLPAAQ TSDKSAVTPE QMDELIQVLR QDYDYILIDC 120
  121 PAGIEQGFKN AVAGADKAIV VTTPEVSSMR DADRIIGLLE KEDIEPPKLV INRVRSHMLH 180
  181 EQDMLDVDEI VRTLSIELLG VVEDDDEVIR ATNTGEPVAL QPSGKAALAY RNIARRLLGE 240
  241 NVPLQAFEQE KVSVFTKMKN FFGIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1hyqA
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	2.69706219265144	bayes_pls_golite062009
transmembrane transporter activity	2.58635717382512	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.48556202938975	bayes_pls_golite062009
pyrophosphatase activity	2.41252439241576	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.39304023323791	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.39004917879972	bayes_pls_golite062009
active transmembrane transporter activity	2.18463291739284	bayes_pls_golite062009
primary active transmembrane transporter activity	2.09025083344077	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.0900453313016	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.05669144734015	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.05524041004513	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.05305002313631	bayes_pls_golite062009
ATPase activity	1.97841731822524	bayes_pls_golite062009
ATPase activity, coupled	1.95585278796853	bayes_pls_golite062009
binding	1.8576045268999	bayes_pls_golite062009
substrate-specific transporter activity	1.33579687022826	bayes_pls_golite062009
hydrolase activity	1.12429454115598	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.01971542992346	bayes_pls_golite062009
purine nucleotide binding	0.725611289205392	bayes_pls_golite062009
nucleotide binding	0.717697610309727	bayes_pls_golite062009
purine ribonucleotide binding	0.713814218071151	bayes_pls_golite062009
ribonucleotide binding	0.713752628021599	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
ion transmembrane transporter activity	0.430733583355069	bayes_pls_golite062009
protein binding	0.378225828131122	bayes_pls_golite062009
ATP binding	0.19169045543599	bayes_pls_golite062009
adenyl ribonucleotide binding	0.165732470448462	bayes_pls_golite062009
adenyl nucleotide binding	0.162060759063149	bayes_pls_golite062009
cation transmembrane transporter activity	0.0184823595743864	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: