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View Structure Prediction Details

Protein: RS14_ACIAD
Organism: Acinetobacter sp. ADP1
Length: 101 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS14_ACIAD.

Description E-value Query
Range
Subject
Range
RR14_MESVI - 30S ribosomal protein S14, chloroplastic OS=Mesostigma viride GN=rps14 PE=3 SV=1
142.0 [0..1] [101..1]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGMINRE LKREKTVAKY AAKRAELKAT IANVNATDEE RFDAMLKLQA LPRNASPVRL  60
   61 RNRCGLTGRP HGYFRKFGLS RNKLRDTVMQ GDVPGVVKAS W

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1vs5N
Description: No description for 1vs5N was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 6.46626105355287 bayes_pls_golite062009
structural molecule activity 5.9950507001335 bayes_pls_golite062009
binding 2.38688645545392 bayes_pls_golite062009
transcription regulator activity 1.92713003801314 bayes_pls_golite062009
nucleic acid binding 1.78943375122683 bayes_pls_golite062009
DNA binding 1.76229029583767 bayes_pls_golite062009
protein binding 1.60194768638501 bayes_pls_golite062009
transcription factor activity 1.15014535964426 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.99776558176649 bayes_pls_golite062009
sequence-specific DNA binding 0.36307842011603 bayes_pls_golite062009
transcription activator activity 0.30551145939731 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.2038327599988 bayes_pls_golite062009
ligand-dependent nuclear receptor activity 0.15407483499486 bayes_pls_golite062009
catalytic activity 0.101795606736461 bayes_pls_golite062009
transcription factor binding 0.0507779401401098 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle