YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11351518
Organism:	Pseudomonas aeruginosa
Length:	482 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11351518.

Description	E-value	Query Range	Subject Range
gi\|28869051, gi\|... - gi\|28869051\|ref\|NP_791670.1\| magnesium transporter [Pseudomonas syringae pv. tomato str. DC3000], gi... tr\|Q885I7\|Q885I7... - Magnesium transporter OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=mgtE PE=4 SV=1 gi\|213926552, gi... - gi\|213968619\|ref\|ZP_03396761.1\| magnesium transporter [Pseudomonas syringae pv. tomato T1], gi\|21392...	3.0E-72	[1..482]	[1..480]
gi\|77460492, gi\|... - gi\|77460492\|ref\|YP_349999.1\| divalent cation transporter [Pseudomonas fluorescens Pf0-1], gi\|7738449...	6.0E-72	[1..482]	[1..480]
gi\|95111857 - gi\|95111857\|emb\|CAK16581.1\| magnesium transporter [Pseudomonas entomophila L48] gi\|95111857, gi\|... - gi\|95111857\|emb\|CAK16581.1\| magnesium transporter [Pseudomonas entomophila L48], gi\|104782870\|ref\|YP...	8.0E-72	[1..482]	[1..480]
gi\|63257488, gi\|... - gi\|66046781\|ref\|YP_236622.1\| divalent cation transporter [Pseudomonas syringae pv. syringae B728a], ...	1.0E-71	[1..482]	[1..480]
gi\|71734684, gi\|... - gi\|71734684\|ref\|YP_275656.1\| magnesium transporter [Pseudomonas syringae pv. phaseolicola 1448A], gi...	2.0E-71	[1..482]	[1..480]
tr\|I7C3E6\|I7C3E6... - Magnesium transporter OS=Pseudomonas putida (strain DOT-T1E) GN=mgtE PE=4 SV=1 gi\|148546684, gi... - gi\|82737720\|ref\|ZP_00900566.1\| Divalent cation transporter [Pseudomonas putida F1], gi\|82715238\|gb\|E... gi\|26991157, gi\|... - gi\|26991157\|ref\|NP_746582.1\| magnesium transporter [Pseudomonas putida KT2440], gi\|24986200\|gb\|AAN70...	2.0E-71	[1..482]	[1..480]
gi\|70731844, gi\|... - gi\|70731844\|ref\|YP_261586.1\| magnesium transporter [Pseudomonas fluorescens Pf-5], gi\|68346143\|gb\|AA...	9.0E-71	[1..482]	[1..480]
gi\|85823287, gi\|... - gi\|86140037\|ref\|ZP_01058601.1\| magnesium transporter [Roseobacter sp. MED193], gi\|85823287\|gb\|EAQ434...	2.0E-70	[35..482]	[18..463]
gi\|120560348, gi... - gi\|82741635\|ref\|ZP_00904352.1\| Divalent cation transporter [Shewanella sp. W3-18-1], gi\|82721026\|gb\|... gi\|77815480, gi\|... - gi\|77815480\|ref\|ZP_00814710.1\| Divalent cation transporter [Shewanella putrefaciens CN-32], gi\|77809...	1.0E-69	[42..482]	[15..453]
gi\|114771677 - gi\|114771677\|ref\|ZP_01449081.1\| magnesium transporter [alpha proteobacterium HTCC2255] gi\|114771677, gi... - gi\|114771677\|ref\|ZP_01449081.1\| magnesium transporter [alpha proteobacterium HTCC2255], gi\|114547749...	2.0E-69	[22..482]	[3..460]

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Predicted Domain #1

Region A:
Residues: [1-482]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVEAKKPQ ESLQDRLAQV VELLHRHKVV EDLTHRQEGQ HHDRVENLVH RQNLVELQRK  60
   61 LEELHPADIA HILESLPLDD RLTVWQLVKS EDDGDILLEV SDAVRETLIA DMDDHEIIAA 120
  121 TKDLDADELA DLAPELPRDV VHELMESLDA QQRERVRSAL SYEEDQVGAL MDFEMVTIRE 180
  181 DVSLEVVLRY LRRLKELPGH TDKLFVVDYD GVLKGVLPIK RLLVNDPDKQ VLEVMATDPV 240
  241 TFHPDEDGYD AAQAFERYDL ISAPVVDKGG KLIGRLTIDE MVDLIREESE SEVLNMAGLR 300
  301 EEEDIFASVW KSVRNRWAWL ATNLITAFVA SRVIGLFEGS IEKLVALAAL MPIVAGIGGN 360
  361 SGNQTITMIV RAIALDQVQP TSNSRNRLLR KELGVALVNG LAWGGVIGVV AFYLYGNWEL 420
  421 GVVMTAAMTL NLLLAAMMGV LIPMTLHRFG RDPAMGSSVM ITAMTDSGGF FIFLGLATIF 480
  481 LM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	2yvxA
Description:	No description for 2yvxA was found.

Predicted functions:

Term	Confidence	Notes
magnesium ion transmembrane transporter activity	8.49541078546556	bayes_pls_golite062009
metal ion transmembrane transporter activity	7.00605533938461	bayes_pls_golite062009
cation transmembrane transporter activity	6.18220777748445	bayes_pls_golite062009
ion transmembrane transporter activity	6.07798698048393	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.69210304834605	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.65569194985625	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	5.33413280536558	bayes_pls_golite062009
transporter activity	3.87852532381405	bayes_pls_golite062009
substrate-specific transporter activity	3.79338887641735	bayes_pls_golite062009
transmembrane transporter activity	3.78746276569027	bayes_pls_golite062009
ion channel activity	2.96289511581809	bayes_pls_golite062009
substrate-specific channel activity	2.85393728592978	bayes_pls_golite062009
channel activity	2.83666655624333	bayes_pls_golite062009
passive transmembrane transporter activity	2.83666655624333	bayes_pls_golite062009
voltage-gated ion channel activity	2.80192263321943	bayes_pls_golite062009
voltage-gated channel activity	2.77911418383955	bayes_pls_golite062009
gated channel activity	2.18781915118831	bayes_pls_golite062009
anion transmembrane transporter activity	1.37302726288049	bayes_pls_golite062009
chloride channel activity	0.854272043830279	bayes_pls_golite062009
anion channel activity	0.854272043830279	bayes_pls_golite062009
binding	0.501912616492394	bayes_pls_golite062009
protein binding	0.00263529689512498	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: