YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259287, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	806 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259287, gi|....

Description	E-value	Query Range	Subject Range
SYFB_BACC1 - Phenylalanine--tRNA ligase beta subunit OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=pheT PE=...	0.0	[1..806]	[1..806]
SYFB_BACCZ - Phenylalanine--tRNA ligase beta subunit OS=Bacillus cereus (strain ZK / E33L) GN=pheT PE=3 SV=1	0.0	[1..806]	[1..806]
gi\|228722992, gi... - gi\|229048267\|ref\|ZP_04193835.1\| Phenylalanyl-tRNA synthetase beta chain [Bacillus cereus AH676], gi\|... gi\|229112024, gi... - gi\|229112024\|ref\|ZP_04241567.1\| Phenylalanyl-tRNA synthetase beta chain [Bacillus cereus Rock1-15], ... gi\|229129843, gi... - gi\|229129843\|ref\|ZP_04258809.1\| Phenylalanyl-tRNA synthetase beta chain [Bacillus cereus BDRD-Cer4],... SYFB_BACCR - Phenylalanine--tRNA ligase beta subunit OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ... gi\|228636367, gi... - gi\|229147118\|ref\|ZP_04275477.1\| Phenylalanyl-tRNA synthetase beta chain [Bacillus cereus BDRD-ST24],...	0.0	[1..806]	[1..806]
SYFB_GEOKA - Phenylalanine--tRNA ligase beta subunit OS=Geobacillus kaustophilus (strain HTA426) GN=pheT PE=3 SV=... SYFB_GEOKA - Phenylalanyl-tRNA synthetase beta chain OS=Geobacillus kaustophilus GN=pheT PE=3 SV=1	0.0	[1..805]	[1..803]
gi\|163942294, gi... - gi\|89205344\|ref\|ZP_01183915.1\| phenylalanyl-tRNA synthetase, beta subunit [Bacillus weihenstephanens...	0.0	[1..806]	[1..806]
gi\|89200374, gi\|... - gi\|89200374\|ref\|ZP_01179128.1\| phenylalanyl-tRNA synthetase, beta subunit [Bacillus cereus subsp. cy...	0.0	[1..806]	[1..806]
gi\|227081392, gi... - gi\|227081392\|ref\|YP_002809943.1\| phenylalanyl-tRNA synthetase, beta chain [Vibrio cholerae M66-2], g... SYFB_VIBCH - Phenylalanine--tRNA ligase beta subunit OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor I... gi\|126518604, gi... - gi\|229511143\|ref\|ZP_04400622.1\| phenylalanyl-tRNA synthetase beta chain [Vibrio cholerae B33], gi\|22... gi\|229505187, gi... - gi\|229505187\|ref\|ZP_04394697.1\| phenylalanyl-tRNA synthetase beta chain [Vibrio cholerae BX 330286],... gi\|229518261, gi... - gi\|229518261\|ref\|ZP_04407705.1\| phenylalanyl-tRNA synthetase beta chain [Vibrio cholerae RC9], gi\|22... gi\|229608207, gi... - gi\|229608207\|ref\|YP_002878855.1\| phenylalanyl-tRNA synthetase beta chain [Vibrio cholerae MJ-1236], ... SYFB_VIBCH - Phenylalanine--tRNA ligase beta chain OS=Vibrio cholerae GN=pheT PE=3 SV=1 gi\|254844050, gi... - gi\|75829638\|ref\|ZP_00758934.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Vibrio cholerae M... gi\|121730320, gi... - gi\|75814003\|ref\|ZP_00744667.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Vibrio cholerae V...	0.0	[1..805]	[1..794]
gi\|77975256, gi\|... - gi\|77975256\|ref\|ZP_00830792.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Yersinia frederik...	0.0	[1..805]	[1..794]
gi\|227117687, gi... - gi\|75826620\|ref\|ZP_00756055.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Vibrio cholerae O...	0.0	[1..805]	[1..794]
gi\|153950288, gi... - gi\|77629408\|ref\|ZP_00791994.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Yersinia pseudotu...	0.0	[1..805]	[1..794]

Back

Predicted Domain #1

Region A:
Residues: [1-806]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVSYRWLQE YVDIKDVTAQ ELADKITKSG IEVEGVEVLN KGVKGVVVGH VLECEKHPEA  60
   61 DKLSKCLIDI GEEEPVQIIC GAANIAKGLK VPVAKVGAVL PGNFKIKKAK LRGEASHGMV 120
  121 CALQELGIDG KLVSKEYADG IFIFPSDAEV GADALEILNL HDEVLELGLT PNRADCLNML 180
  181 GVAYEVAAIY GREVKLPAID LQETAEKTSD YISVSVEAKE ENPLYIAKMV KNVKIGPSPM 240
  241 WMQTRLMAAG IRPISNVVDI TNYILMEYGQ PLHAFDYDKL GSKEIVVRLA KEGEKIETLD 300
  301 DQERTLQSHH LVITNGTKAL AVAGVMGGAD SEVTNETVNV LIESAYFAGQ TVRRTSKDLG 360
  361 LRSESSARFE KGIDPTRTFE AIQHAAALMA KYAGGEALEG VVEADNLQVQ ERTVSVTAEK 420
  421 VNRVLGTNIS ASEMGTMFTN LKFPFTEVEG TFHVNVPARR PDITISEDLV EEVGRLYGYD 480
  481 HIPVTLPSGT MTRGKLTAAQ TKRRKVRRFL EGAGLYEAIT YSLTSADKAK QYMVEPNEKA 540
  541 PVNLALPMSE ERSQLRLSLV PQLLEAVSYN VARKNDSVAL YEVGSIFLPT EAGELPKEEQ 600
  601 HLAGVMTGLA LHHAWQGEKK VVDFFVVKGV LEGLFDVLGV SNQITYAPAK REGMHPGRTA 660
  661 DIVLDGEVIG FIGQLHPEAE KQLDVKNTFV FELSLVKVFG TDAEETYYSA IPRFPSMTRD 720
  721 MAVVVTKETK AGEMKQVIAE AGGELLKDVT LFDLYEGEKM EEGKKSLAFS MNYFDPERTL 780
  781 TDEEVTEAHN RVLTAVEEKF GAELRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	177.0
Match:	1b70B
Description:	Domains B1 and B5 of PheRS-beta, PheT; Domain B2 of PheRS-beta, PheT; Phenylalanyl-tRNA synthetase; Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain; B3/B4 domain of PheRS, PheT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phenylalanine-tRNA ligase activity	13.8919118344182	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	8.21379103874748	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	8.21379103874748	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	8.20292704456024	bayes_pls_golite062009
structural constituent of ribosome	2.90150581291897	bayes_pls_golite062009
glycine-tRNA ligase activity	2.61548498770105	bayes_pls_golite062009
ligase activity	2.56279938346489	bayes_pls_golite062009
structural molecule activity	2.54582212334303	bayes_pls_golite062009
nucleic acid binding	2.40504745115911	bayes_pls_golite062009
threonine-tRNA ligase activity	2.18642354927	bayes_pls_golite062009
serine-tRNA ligase activity	2.07594942154162	bayes_pls_golite062009
alanine-tRNA ligase activity	1.82594054955281	bayes_pls_golite062009
lysine-tRNA ligase activity	1.72324031407565	bayes_pls_golite062009
histidine-tRNA ligase activity	1.72215103383322	bayes_pls_golite062009
binding	1.60192408330567	bayes_pls_golite062009
DNA binding	1.60160949474354	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
aspartate-tRNA ligase activity	0.921774798819338	bayes_pls_golite062009
asparagine-tRNA ligase activity	0.921492123574877	bayes_pls_golite062009
ribonuclease activity	0.506819168662173	bayes_pls_golite062009
structure-specific DNA binding	0.440010017405756	bayes_pls_golite062009
nuclease activity	0.29926900436997	bayes_pls_golite062009
single-stranded DNA binding	0.19668406318255	bayes_pls_golite062009
RNA binding	0.17671444859699	bayes_pls_golite062009
protein binding	0.175576548546361	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: