YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259757, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259757, gi|....

Description	E-value	Query Range	Subject Range
gi\|52078533, gi\|... - gi\|52783895\|ref\|YP_089724.1\| methionyl-tRNA synthetase [Bacillus licheniformis ATCC 14580], gi\|52346...	0.0	[2..541]	[7..537]
SYM_BACHD - Methionyl-tRNA synthetase OS=Bacillus halodurans GN=metG PE=3 SV=1 SYM_BACHD - Methionine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 91...	0.0	[2..541]	[7..537]
gi\|56908077, gi\|... - gi\|56961843\|ref\|YP_173565.1\| methionyl-tRNA synthetase [Bacillus clausii KSM-K16], gi\|56908077\|dbj\|B...	0.0	[2..541]	[5..535]
SYM_BACSU - Methionine--tRNA ligase OS=Bacillus subtilis GN=metG PE=3 SV=1 SYM_BACSU - Methionine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=metG PE=3 SV=1 gi\|221312169 - gi\|221312169\|ref\|ZP_03593974.1\| methionyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NC... gi\|221317102 - gi\|221317102\|ref\|ZP_03598396.1\| methionyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. JH... gi\|221321365 - gi\|221321365\|ref\|ZP_03602659.1\| methionyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SM...	0.0	[2..541]	[7..537]
gi\|68194356, gi\|... - gi\|69248667\|ref\|ZP_00604797.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s... gi\|48824095 - ref\|ZP_00285520.1\| COG0143: Methionyl-tRNA synthetase [Enterococcus faecium] gi\|227552442, gi... - gi\|227552442\|ref\|ZP_03982491.1\| methionine--tRNA ligase [Enterococcus faecium TX1330], gi\|227178417\|...	0.0	[2..541]	[6..535]
gi\|67850849, gi\|... - gi\|67875076\|ref\|ZP_00504595.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s...	0.0	[2..529]	[5..512]
gi\|89149759, gi\|... - gi\|89202242\|ref\|ZP_01180970.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s...	0.0	[2..540]	[7..536]
SYM_GEOSE - Methionine--tRNA ligase OS=Geobacillus stearothermophilus GN=metG PE=3 SV=1	0.0	[2..541]	[5..525]
gi\|56378408, gi\|... - gi\|56418566\|ref\|YP_145884.1\| methionyl-tRNA synthetase (methionine--tRNA ligase) [Geobacillus kausto...	0.0	[2..541]	[5..525]
gi\|42735032, gi\|... - gi\|42779117\|ref\|NP_976364.1\| methionyl-tRNA synthetase [Bacillus cereus ATCC 10987], gi\|42735032\|gb\|...	0.0	[2..542]	[7..538]

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Predicted Domain #1

Region A:
Residues: [1-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFIGGAWP YANGSLHLGH IASLLPGDIL ARYYRAKGEN VLYVSGSDCN GTPIAIRAKQ  60
   61 EGVTAKEIAN KYHEEFERCF RNLGFTYDCY TRTDSEHHHE TVQNVFLRLL EEGHIYKKTV 120
  121 EQAYCETCTQ FLPDCYVEGV CPHCHEEARG DQCDACSAIL DPLDLLEKKC KLCGSTPSIQ 180
  181 ETEHFYFALH TFQEQIKRAV EIAKQTGTWR DNAIQLTERY VKEGLLDRAV SRDLPIGVPI 240
  241 PVEGYEDKKI YVWIEAVTGY YSASKHWAEE TGKDDREFWD GEAKTYYVHG KDNIPFHSVI 300
  301 WPAVLLGIGE GTIPRHIVSN EYLTVEKRKL STSKNWAVWV PDILERYDPD SIRYFLIVNA 360
  361 PENRDTDFSW REFIYSHNSE LLGAYGNFVN RTLKFIEKYY GGIMPKGSID VELKDKIERL 420
  421 YKHVGEAIEQ TKFKVALESI FDAVRFANKY FDERQPWKER EDDPVSCEET IYNCVYLIAN 480
  481 FANLLEPFLP FSSERIRNTL SIVNRNWEPQ HTLPSRIDSV QPLFERIDVK QIECELEKLY 540
  541 GAVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.69897
Match:	1rqgA
Description:	Methionyl-tRNA synthetase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
methionine-tRNA ligase activity	5.54691369460949	bayes_pls_golite062009
isoleucine-tRNA ligase activity	3.76808520367507	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
tyrosine-tRNA ligase activity	1.88984817882585	bayes_pls_golite062009
arginine-tRNA ligase activity	1.50161401062914	bayes_pls_golite062009
tryptophan-tRNA ligase activity	1.14187887833901	bayes_pls_golite062009
nucleotidyltransferase activity	1.1171189808593	bayes_pls_golite062009
cysteine-tRNA ligase activity	0.844943947059557	bayes_pls_golite062009
nucleic acid binding	0.449504767632354	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.126511747475258	bayes_pls_golite062009
glutamine-tRNA ligase activity	0.118292082006187	bayes_pls_golite062009
binding	0.090743795600025	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: