YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258960, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258960, gi|....

Description	E-value	Query Range	Subject Range
gi\|85773561, gi\|... - gi\|86157050\|ref\|YP_463835.1\| type II secretion system protein E [Anaeromyxobacter dehalogenans 2CP-C...	5.0E-86	[3..344]	[181..528]
gi\|83646647, gi\|... - gi\|83646647\|ref\|YP_435082.1\| Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPa...	6.0E-86	[3..344]	[137..481]
gi\|188575729, gi... - gi\|188575729\|ref\|YP_001912658.1\| type IV-A pilus assembly ATPase PilB [Xanthomonas oryzae pv. oryzae... gi\|84623129, gi\|... - gi\|84623129\|ref\|YP_450501.1\| pilus biogenesis protein [Xanthomonas oryzae pv. oryzae MAFF 311018], g...	6.0E-86	[3..346]	[194..542]
gi\|89049776, gi\|... - gi\|89074488\|ref\|ZP_01160965.1\| putative general secretion pathway protein E [Photobacterium sp. SKA3...	6.0E-86	[3..347]	[119..468]
gi\|218708200, gi... - gi\|218708200\|ref\|YP_002415821.1\| Type II secretory pathway, ATPase EpsE [Vibrio splendidus LGP32], g... gi\|85835628, gi\|... - gi\|86146571\|ref\|ZP_01064893.1\| Type II secretory pathway, ATPase EpsE [Vibrio sp. MED222], gi\|858356...	7.0E-86	[3..347]	[119..468]
gi\|90437782, gi\|... - gi\|90581086\|ref\|ZP_01236886.1\| putative general secretion pathway protein E [Vibrio angustum S14], g...	8.0E-86	[3..347]	[119..468]
gi\|88819242, gi\|... - gi\|88859016\|ref\|ZP_01133657.1\| type IV pilus biogenesis protein PilB [Pseudoalteromonas tunicata D2]...	8.0E-86	[3..346]	[182..530]
gi\|58581212, gi\|... - gi\|58581212\|ref\|YP_200228.1\| pilus biogenesis protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|...	9.0E-86	[3..346]	[212..560]
gi\|84703747, gi\|... - gi\|84703747\|ref\|ZP_01017575.1\| general secretion pathway protein E [Parvularcula bermudensis HTCC250...	1.0E-85	[3..346]	[128..475]
gi\|84386330, gi\|... - gi\|84386330\|ref\|ZP_00989358.1\| Type II secretory pathway, ATPase EpsE [Vibrio splendidus 12B01], gi\|...	2.0E-85	[3..347]	[119..468]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGIESFANM ILKEACRVQA SDLHIVPRQK DVVVQLRIGK DLMTKYCIEK EFGEKLVSHF  60
   61 KFLASMDIGE RRKPQNGSLY LQMDGQEVYL RLSTLPTVYQ ESLVIRLHLQ ASIQPLSHLS 120
  121 LFPSTAKKLL SFLRYSHGLL VFTGPTGSGK TTTMYALLEV IRKKKTRRIV TLEDPVEKRN 180
  181 DDVLQIQINE KAGITYEAGL KAILRHDPDV ILVGEIRDEE TAKIAIRASL TGHLVMTTLH 240
  241 TNDARGAILR FMGFGITRQE IEQSLLAIAA QRLVELKCPF CKRKCSTLCK SMRQVRQASI 300
  301 YELLYGYELK QAIKEANGEC VTYKHETLQS SIRKGYALGF LEEDVYV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.30103
Match:	1p9rA
Description:	Crystal Structure of Vibrio cholerae putative NTPase EpsE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	1.95073642969863	bayes_pls_golite062009
pyrophosphatase activity	1.91141407779641	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.9017593265179	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.90014393273511	bayes_pls_golite062009
transporter activity	1.55572428045529	bayes_pls_golite062009
ATPase activity	1.48474288797022	bayes_pls_golite062009
transmembrane transporter activity	1.38483976298883	bayes_pls_golite062009
ATPase activity, coupled	1.37457738689583	bayes_pls_golite062009
active transmembrane transporter activity	1.24278046928678	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.2014318795788	bayes_pls_golite062009
primary active transmembrane transporter activity	1.19670408144267	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.17063957238561	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	1.16918853509059	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	1.16885789920943	bayes_pls_golite062009
hydrolase activity	1.09839981963412	bayes_pls_golite062009
binding	1.0816829831484	bayes_pls_golite062009
catalytic activity	0.828877635849693	bayes_pls_golite062009
purine ribonucleotide binding	0.5127850474754	bayes_pls_golite062009
ribonucleotide binding	0.51230334374838	bayes_pls_golite062009
purine nucleotide binding	0.50688037036449	bayes_pls_golite062009
nucleotide binding	0.49473184426584	bayes_pls_golite062009
substrate-specific transporter activity	0.0838665746103899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: