YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258078, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258078, gi|....

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	2.0E-86	[1..319]	[12..333]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	6.0E-82	[1..320]	[1..323]
gi\|71733591, gi\|... - gi\|71733591\|ref\|YP_272602.1\| quinone oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], g...	7.0E-81	[1..320]	[1..323]
gi\|77385669, gi\|... - gi\|77461666\|ref\|YP_351173.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	7.0E-80	[1..319]	[1..322]
gi\|63254289, gi\|... - gi\|66043582\|ref\|YP_233423.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	9.0E-80	[1..320]	[1..323]
gi\|42782547, gi\|... - gi\|42782547\|ref\|NP_979794.1\| quinone oxidoreductase [Bacillus cereus ATCC 10987], gi\|42738473\|gb\|AAS...	2.0E-79	[1..321]	[1..321]
gi\|68347561, gi\|... - gi\|70733262\|ref\|YP_263035.1\| oxidoreductase, zinc-binding [Pseudomonas fluorescens Pf-5], gi\|6834756...	3.0E-79	[1..319]	[1..322]
gi\|94417709, gi\|... - gi\|94417709\|ref\|ZP_01297526.1\| hypothetical protein PaerP_01000487 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-78	[1..319]	[1..322]
gi\|84317897, gi\|... - gi\|84317897\|ref\|ZP_00966332.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|116053381, gi... - gi\|32044610\|ref\|ZP_00141711.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|107104336 - gi\|107104336\|ref\|ZP_01368254.1\| hypothetical protein PaerPA_01005411 [Pseudomonas aeruginosa PACS2]	2.0E-78	[1..319]	[1..322]
gi\|106770456, gi... - gi\|148655624\|ref\|YP_001275829.1\| alcohol dehydrogenase [Roseiflexus sp. RS-1], gi\|148567734\|gb\|ABQ89...	3.0E-78	[1..321]	[1..322]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALCFETFG NADVLQYKEI PDPIINPNEI LVRTKAIGLN FADIYRRRGD YHLAGNPPYI  60
   61 LGYEGAGIVE EIGTNVTTIK PGDRIAFADV PFANAELVAV PSKKTIQLPN SISFETAASV 120
  121 LLQGLTAHYL TKDSYQIKQG DIALVHAAAG GVGQLLIQII KLLGGTAIGL TSSNEKAKVA 180
  181 TLAGADHVFL YSEKWHSKVL EITNGTGVNV VYESVGSTLE ESFNATKIGG TVVFYGMAGG 240
  241 NPAPVDPRML MDTSKTLTGG DLWNVLTTFE ERKQRSTQLF DWIASGKLNI ASPTTFSLQD 300
  301 GAHAHKLLES RKSTGKILLI P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	1qorA
Description:	Quinone oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	4.14217990101505	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	2.94416173750168	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	2.27417613545298	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	2.26153457113968	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.0836009784049	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
retinol dehydrogenase activity	1.04497968922284	bayes_pls_golite062009
binding	0.982999356179965	bayes_pls_golite062009
nucleic acid binding	0.980245559401213	bayes_pls_golite062009
DNA binding	0.940078857029005	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.905392379451071	bayes_pls_golite062009
transcription regulator activity	0.854100257756792	bayes_pls_golite062009
RNA binding	0.843556706364142	bayes_pls_golite062009
chaperone binding	0.593082758130032	bayes_pls_golite062009
protein binding	0.507836099271263	bayes_pls_golite062009
coenzyme binding	0.46570602169425	bayes_pls_golite062009
NAD or NADH binding	0.46286018152257	bayes_pls_golite062009
molecular transducer activity	0.435382281024944	bayes_pls_golite062009
signal transducer activity	0.435382281024944	bayes_pls_golite062009
transcription factor activity	0.35056694435192	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.331998750763528	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.261132005311306	bayes_pls_golite062009
receptor activity	0.219998435023684	bayes_pls_golite062009
cation transmembrane transporter activity	0.200409117794759	bayes_pls_golite062009
channel activity	0.166857973838454	bayes_pls_golite062009
passive transmembrane transporter activity	0.166857973838454	bayes_pls_golite062009
substrate-specific channel activity	0.14195924411997	bayes_pls_golite062009
G-protein coupled receptor activity	0.135469305070471	bayes_pls_golite062009
ion channel activity	0.0487923057681532	bayes_pls_golite062009
ion transmembrane transporter activity	0.0361234153211201	bayes_pls_golite062009
transmembrane receptor activity	0.0180992866169776	bayes_pls_golite062009
gated channel activity	0.015794644474568	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: