YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262726, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262726, gi|....

Description	E-value	Query Range	Subject Range
gi\|89200187, gi\|... - gi\|89200187\|ref\|ZP_01178942.1\| Cysteine desulphurases, SufS [Bacillus cereus subsp. cytotoxis NVH 39...	2.0E-66	[22..410]	[3..397]
gi\|47505669, gi\|... - gi\|47530521\|ref\|YP_021870.1\| aminotransferase, class V [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30265020, gi\|... - gi\|30265020\|ref\|NP_847397.1\| aminotransferase, class V [Bacillus anthracis str. Ames], gi\|30259697\|g... gi\|65316972, gi\|... - gi\|65316972\|ref\|ZP_00389931.1\| COG0520: Selenocysteine lyase [Bacillus anthracis str. A2012], ref\|NP... gi\|229268065, gi... - gi\|229603657\|ref\|YP_002869222.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0248], gi\|22926...	1.0E-65	[22..410]	[3..397]
gi\|218900136, gi... - gi\|218900136\|ref\|YP_002448547.1\| cysteine desulfurase SufS [Bacillus cereus G9842], gi\|218542809\|gb\|... gi\|228910821, gi... - gi\|228910821\|ref\|ZP_04074630.1\| cysteine desulfurase [Bacillus thuringiensis IBL 200], gi\|228848772\|... gi\|228856171, gi... - gi\|228903486\|ref\|ZP_04067611.1\| cysteine desulfurase [Bacillus thuringiensis IBL 4222], gi\|228856171... gi\|228961227, gi... - gi\|228961227\|ref\|ZP_04122847.1\| cysteine desulfurase [Bacillus thuringiensis serovar pakistani str. ... gi\|218233850, gi... - gi\|218233850\|ref\|YP_002369783.1\| cysteine desulfurase SufS [Bacillus cereus B4264], gi\|218161807\|gb\|... gi\|228817483, gi... - gi\|228942149\|ref\|ZP_04104689.1\| cysteine desulfurase [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228784599, gi... - gi\|228975078\|ref\|ZP_04135637.1\| cysteine desulfurase [Bacillus thuringiensis serovar thuringiensis s... gi\|228968099, gi... - gi\|228968099\|ref\|ZP_04129104.1\| cysteine desulfurase [Bacillus thuringiensis serovar sotto str. T040... gi\|229032620, gi... - gi\|229032620\|ref\|ZP_04188584.1\| cysteine desulfurase [Bacillus cereus AH1271], gi\|228728705\|gb\|EEL79... gi\|228981718, gi... - gi\|228981718\|ref\|ZP_04142013.1\| cysteine desulfurase [Bacillus thuringiensis Bt407], gi\|228777830\|gb... gi\|229112426, gi... - gi\|229112426\|ref\|ZP_04241964.1\| cysteine desulfurase [Bacillus cereus Rock1-15], gi\|228671074\|gb\|EEL... gi\|229049673, gi... - gi\|229049673\|ref\|ZP_04194230.1\| cysteine desulfurase [Bacillus cereus AH676], gi\|228722586\|gb\|EEL739... gi\|74491798, gi\|... - gi\|75760714\|ref\|ZP_00740738.1\| Cysteine desulfurase / Selenocysteine lyase [Bacillus thuringiensis ... gi\|228630272, gi... - gi\|229153173\|ref\|ZP_04281352.1\| cysteine desulfurase [Bacillus cereus m1550], gi\|228630272\|gb\|EEK869... gi\|30023021, gi\|... - gi\|30023021\|ref\|NP_834652.1\| cysteine desulfhydrase [Bacillus cereus ATCC 14579], gi\|29898581\|gb\|AAP... gi\|229130239, gi... - gi\|229130239\|ref\|ZP_04259198.1\| cysteine desulfurase [Bacillus cereus BDRD-Cer4], gi\|228653172\|gb\|EE... gi\|228619580, gi... - gi\|229163959\|ref\|ZP_04291899.1\| cysteine desulfurase [Bacillus cereus R309803], gi\|228619580\|gb\|EEK7...	1.0E-65	[22..410]	[3..397]
gi\|206745313, gi... - gi\|206976389\|ref\|ZP_03237296.1\| cysteine desulfurase SufS [Bacillus cereus H3081.97], gi\|206745313\|g... gi\|196044098, gi... - gi\|196044098\|ref\|ZP_03111335.1\| cysteine desulfurase SufS [Bacillus cereus 03BB108], gi\|196025434\|gb... gi\|49187839, gi\|... - gi\|49187839\|ref\|YP_031092.1\| aminotransferase, class V [Bacillus anthracis str. Sterne], gi\|49181766... gi\|52140552, gi\|... - gi\|52140552\|ref\|YP_086277.1\| aminotransferase, class V, cysteine desulfhydrase [Bacillus cereus E33L... gi\|225866952, gi... - gi\|225866952\|ref\|YP_002752330.1\| cysteine desulfurase SufS [Bacillus cereus 03BB102], gi\|225785964\|g... gi\|228596228, gi... - gi\|229187218\|ref\|ZP_04314363.1\| cysteine desulfurase [Bacillus cereus BGSC 6E1], gi\|228596228\|gb\|EEK... gi\|228771520, gi... - gi\|228988223\|ref\|ZP_04148320.1\| cysteine desulfurase [Bacillus thuringiensis serovar tochigiensis BG... gi\|228917608, gi... - gi\|228917608\|ref\|ZP_04081152.1\| cysteine desulfurase [Bacillus thuringiensis serovar pulsiensis BGSC... gi\|227817752, gi... - gi\|227817752\|ref\|YP_002817761.1\| cysteine desulfurase SufS [Bacillus anthracis str. CDC 684], gi\|227... gi\|254735350 - gi\|254735350\|ref\|ZP_05193058.1\| cysteine desulfurase SufS [Bacillus anthracis str. Western North Ame... gi\|254725325 - gi\|254725325\|ref\|ZP_05187108.1\| cysteine desulfurase SufS [Bacillus anthracis str. A1055] gi\|254687313 - gi\|254687313\|ref\|ZP_05151170.1\| cysteine desulfurase SufS [Bacillus anthracis str. CNEVA-9066] gi\|228584398, gi... - gi\|229199127\|ref\|ZP_04325810.1\| cysteine desulfurase [Bacillus cereus m1293], gi\|228584398\|gb\|EEK425... gi\|42784164, gi\|... - gi\|42784164\|ref\|NP_981411.1\| aminotransferase, class V [Bacillus cereus ATCC 10987], gi\|42740095\|gb\|... gi\|254761463 - gi\|254761463\|ref\|ZP_05213484.1\| cysteine desulfurase SufS [Bacillus anthracis str. Australia 94] gi\|254753121 - gi\|254753121\|ref\|ZP_05205157.1\| cysteine desulfurase SufS [Bacillus anthracis str. Vollum] gi\|254740617 - gi\|254740617\|ref\|ZP_05198308.1\| cysteine desulfurase SufS [Bacillus anthracis str. Kruger B] gi\|118480065, gi... - gi\|118480065\|ref\|YP_897216.1\| cysteine desulfurase, aminotransferase class-V [Bacillus thuringiensis... gi\|190567163, gi... - gi\|190567163\|ref\|ZP_03020078.1\| cysteine desulfurase SufS [Bacillus anthracis Tsiankovskii-I], gi\|19... gi\|172082212, gi... - gi\|177652206\|ref\|ZP_02934709.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0174], gi\|172082... gi\|170706965, gi... - gi\|170706965\|ref\|ZP_02897422.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0389], gi\|170128... gi\|170686006, gi... - gi\|170686006\|ref\|ZP_02877229.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0465], gi\|170670... gi\|167512122, gi... - gi\|167640041\|ref\|ZP_02398309.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0193], gi\|167512... gi\|167529747, gi... - gi\|167634997\|ref\|ZP_02393315.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0442], gi\|167529... gi\|164713435, gi... - gi\|165870926\|ref\|ZP_02215578.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0488], gi\|164713...	2.0E-65	[22..410]	[3..397]
gi\|229062649, gi... - gi\|229062649\|ref\|ZP_04199958.1\| cysteine desulfurase [Bacillus cereus AH603], gi\|228716619\|gb\|EEL683... gi\|228747124, gi... - gi\|229014170\|ref\|ZP_04171291.1\| cysteine desulfurase [Bacillus mycoides DSM 2048], gi\|228747124\|gb\|E... gi\|229169703, gi... - gi\|229169703\|ref\|ZP_04297403.1\| cysteine desulfurase [Bacillus cereus AH621], gi\|228613742\|gb\|EEK708... gi\|228647675, gi... - gi\|229135809\|ref\|ZP_04264579.1\| cysteine desulfurase [Bacillus cereus BDRD-ST196], gi\|228647675\|gb\|E... gi\|163864893, gi... - gi\|89206044\|ref\|ZP_01184607.1\| Cysteine desulphurases, SufS [Bacillus weihenstephanensis KBAB4], gi\|...	4.0E-65	[22..410]	[3..397]
gi\|218906174, gi... - gi\|218906174\|ref\|YP_002454008.1\| cysteine desulfurase SufS [Bacillus cereus AH820], gi\|218535531\|gb\|... gi\|49332595, gi\|... - gi\|49481039\|ref\|YP_039000.1\| aminotransferase, class V; cysteine desulfhydrase [Bacillus thuringiens... gi\|47556336, gi\|... - gi\|47567018\|ref\|ZP_00237735.1\| MW0797 [Bacillus cereus G9241], gi\|47556336\|gb\|EAL14670.1\| MW0797 [Ba... gi\|195994370, gi... - gi\|196032941\|ref\|ZP_03100354.1\| cysteine desulfurase SufS [Bacillus cereus W], gi\|195994370\|gb\|EDX58... gi\|228823394, gi... - gi\|228936278\|ref\|ZP_04099077.1\| cysteine desulfurase [Bacillus thuringiensis serovar andalousiensis ... gi\|228930004, gi... - gi\|228930004\|ref\|ZP_04093015.1\| cysteine desulfurase [Bacillus thuringiensis serovar pondicheriensis... gi\|228658856, gi... - gi\|229124516\|ref\|ZP_04253701.1\| cysteine desulfurase [Bacillus cereus 95/8201], gi\|228658856\|gb\|EEL1... gi\|228948706, gi... - gi\|228948706\|ref\|ZP_04110984.1\| cysteine desulfurase [Bacillus thuringiensis serovar monterrey BGSC ... gi\|228590239, gi... - gi\|229193262\|ref\|ZP_04320213.1\| cysteine desulfurase [Bacillus cereus ATCC 10876], gi\|228590239\|gb\|E... gi\|228607819, gi... - gi\|229175678\|ref\|ZP_04303186.1\| cysteine desulfurase [Bacillus cereus MM3], gi\|228607819\|gb\|EEK65133...	5.0E-65	[22..410]	[3..397]
NFS1_ASHGO - Cysteine desulfurase, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /... NFS1_ASHGO - Cysteine desulfurase, mitochondrial OS=Ashbya gossypii GN=NFS1 PE=3 SV=1	1.0E-64	[2..423]	[51..474]
gi\|90822047, gi\|... - gi\|90962853\|ref\|YP_536768.1\| putative aminotransferase [Lactobacillus salivarius UCC118], gi\|9082204...	7.0E-64	[25..411]	[8..403]
gi\|83856314, gi\|... - gi\|83856314\|ref\|ZP_00949843.1\| selenocysteine lyase [Croceibacter atlanticus HTCC2559], gi\|83850114\|...	8.0E-64	[22..411]	[12..407]
gi\|119191496, gi... - gi\|90305140\|gb\|EAS34771.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119191496\|re...	1.0E-63	[32..423]	[108..495]

Back

Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKEPFQPTY EYALECDKHD ELKDFQTEFY KKEGTIYLDG NSLGLLSKRA EKSLLTLLDS  60
   61 WKEYGIDGWT EGEHPWFFLS EKLGELTAPL IGALPEETIV TGSTTTNIHQ VIATFYEPKG 120
  121 IRTKILADEL TFPSDIYALQ SQIRLKGLDP DEHLVRVKSR DGRTLSEDDI IQAMTDDIAL 180
  181 ILLPSVLYRS GQILDMKRLT AEAHERGIHI GFDLCHSIGS IPHHFKEWDV DFAIWCNYKY 240
  241 LNAGPGGVAG LYVNKKHFNR LPGLSGWFSS RKDKQFDMEH TLTAADHAGA YQIGTPHVLS 300
  301 TAPLIGSLEI FKEAGIERLR EKSLHITRFM LNLIAHELSD FGFTIGNPLE DEKRGGHIYL 360
  361 EHAEAARICK ALKANGVIPD FRAPNGVRLA PVALYNTYEE VWQSVMILKK IMKDEEYKQF 420
  421 ENKREVVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1qz9A
Description:	The Three Dimensional Structure of Kynureninase from Pseudomonas fluorescens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
kynureninase activity	2.59165261500184	bayes_pls_golite062009
4-aminobutyrate transaminase activity	2.50008459801306	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.63055151623667	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.63055151623667	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	0.942545094747784	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds	0.845816961387768	bayes_pls_golite062009
vitamin binding	0.66463470119531	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.619695949258279	bayes_pls_golite062009
5-aminolevulinate synthase activity	0.54326874956263	bayes_pls_golite062009
binding	0.536634592992536	bayes_pls_golite062009
DNA binding	0.389113644810484	bayes_pls_golite062009
nucleic acid binding	0.372164613160832	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.319452731970428	bayes_pls_golite062009
transcription regulator activity	0.275761878704287	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
aromatic-amino-acid:2-oxoglutarate aminotransferase activity	0.0916183433120769	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: