YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255371, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255371, gi|....

Description	E-value	Query Range	Subject Range
gi\|56420835, gi\|... - gi\|56420835\|ref\|YP_148153.1\| diaminopimelate decarboxylase [Geobacillus kaustophilus HTA426], gi\|563...	0.0	[1..435]	[1..434]
gi\|221319501 - gi\|221319501\|ref\|ZP_03600795.1\| diaminopimelate decarboxylase [Bacillus subtilis subsp. subtilis str... gi\|221314579 - gi\|221314579\|ref\|ZP_03596384.1\| diaminopimelate decarboxylase [Bacillus subtilis subsp. subtilis str... DCDA_BACSU - Diaminopimelate decarboxylase OS=Bacillus subtilis GN=lysA PE=2 SV=5 gi\|221323777 - gi\|221323777\|ref\|ZP_03605071.1\| diaminopimelate decarboxylase [Bacillus subtilis subsp. subtilis str... DCDA_BACSU - Diaminopimelate decarboxylase OS=Bacillus subtilis (strain 168) GN=lysA PE=3 SV=5	0.0	[1..435]	[1..434]
DCDA_BACSU - Diaminopimelate decarboxylase OS=Bacillus subtilis GN=lysA PE=2 SV=4	0.0	[1..435]	[3..436]
gi\|51977395, gi\|... - gi\|52143926\|ref\|YP_082902.1\| diaminopimelate decarboxylase [Bacillus cereus E33L], gi\|51977395\|gb\|AA...	0.0	[1..438]	[1..438]
gi\|49477226, gi\|... - gi\|49477226\|ref\|YP_035636.1\| diaminopimelate decarboxylase [Bacillus thuringiensis serovar konkukian...	0.0	[1..438]	[1..438]
gi\|21399334, gi\|... - gi\|65318785\|ref\|ZP_00391744.1\| COG0019: Diaminopimelate decarboxylase [Bacillus anthracis str. A2012...	0.0	[1..438]	[1..438]
gi\|42780616, gi\|... - gi\|42780616\|ref\|NP_977863.1\| diaminopimelate decarboxylase [Bacillus cereus ATCC 10987], gi\|42736536...	0.0	[1..438]	[1..438]
gi\|89207815, gi\|... - gi\|89207815\|ref\|ZP_01186346.1\| Diaminopimelate decarboxylase [Bacillus weihenstephanensis KBAB4], gi... gi\|228651031, gi... - gi\|229132325\|ref\|ZP_04261179.1\| Diaminopimelate decarboxylase [Bacillus cereus BDRD-ST196], gi\|22865...	0.0	[1..438]	[1..438]
gi\|20808385, gi\|... - gi\|20808385\|ref\|NP_623556.1\| diaminopimelate decarboxylase [Thermoanaerobacter tengcongensis MB4], g... gi\|20808385 - gi\|20808385\|ref\|NP_623556.1\| Diaminopimelate decarboxylase [Thermoanaerobacter tengcongensis MB4]	0.0	[3..433]	[2..432]
gi\|47566309, gi\|... - gi\|47566309\|ref\|ZP_00237337.1\| diaminopimelate decarboxylase [Bacillus cereus G9241], gi\|47556862\|gb...	0.0	[1..438]	[1..438]

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Predicted Domain #1

Region A:
Residues: [1-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLHGTSRIN GQGHLEIGGC DTTQLAKQYG TPLYVYDEES IRGKCRAFHR AFKESGFSYQ  60
   61 VAYASKAFLC MEMCRVAREE NMSLDVVSGG ELYTALQAGF PASRIHFHGN NKTEEEIVMA 120
  121 LQANIGCFVV DNFLELEILH DLAVQHGKFV NILIRVTPGV EAHTHEYITT GQDDSKFGFG 180
  181 VSNGQAMQAI ELALQKSNYN VLGIHSHIGS QIFETAGFVR AIEVLHQFLE EVRERTNYVV 240
  241 KVLNVGGGFG IRYTESDTPL TLETYVRAVT SAVREQFTVC NYPLPEIWVE PGRSIVGDAG 300
  301 TTLYTVGSVK DIPGIRKYVS VDGGMTDNLR PALYNARYEA MLANRGNDEN EETVSIAGKC 360
  361 CESGDMLIWD ITLPKVASAD LLAISCTGAY GYSMANNYNR IRRPAVVFVK GGTSQIVVER 420
  421 ETYENIIGND RIRIKELV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1hkvA
Description:	Diaminopimelate decarboxylase LysA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
diaminopimelate decarboxylase activity	3.58479480906491	bayes_pls_golite062009
amino-acid racemase activity	2.10295722394074	bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives	1.96192295083077	bayes_pls_golite062009
catalytic activity	1.23611818854966	bayes_pls_golite062009
ornithine decarboxylase activity	0.564318776647641	bayes_pls_golite062009
lyase activity	0.320782640542698	bayes_pls_golite062009
carboxy-lyase activity	0.14065879331273	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: