YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|30255371, gi|...

General Information:
Name(s) found: gi|30261517 [NCBI NR]
gi|30255371 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|30261517|ref|NP_843894.1| diaminopimelate decarboxylase [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30255371|gb|AAP25380.1| diaminopimelate decarboxylase [Bacillus anthracis str. Ames] [NCBI NR]
    • Organism: Bacillus anthracis str. Ames
    Length: 438 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lysine biosynthetic process via diaminopimelate [ISSLink to PubMed article]
    Molecular Function: diaminopimelate decarboxylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLHGTSRIN GQGHLEIGGC DTTQLAKQYG TPLYVYDEES IRGKCRAFHR AFKESGFSYQ  60
   61 VAYASKAFLC MEMCRVAREE NMSLDVVSGG ELYTALQAGF PASRIHFHGN NKTEEEIVMA 120
  121 LQANIGCFVV DNFLELEILH DLAVQHGKFV NILIRVTPGV EAHTHEYITT GQDDSKFGFG 180
  181 VSNGQAMQAI ELALQKSNYN VLGIHSHIGS QIFETAGFVR AIEVLHQFLE EVRERTNYVV 240
  241 KVLNVGGGFG IRYTESDTPL TLETYVRAVT SAVREQFTVC NYPLPEIWVE PGRSIVGDAG 300
  301 TTLYTVGSVK DIPGIRKYVS VDGGMTDNLR PALYNARYEA MLANRGNDEN EETVSIAGKC 360
  361 CESGDMLIWD ITLPKVASAD LLAISCTGAY GYSMANNYNR IRRPAVVFVK GGTSQIVVER 420
  421 ETYENIIGND RIRIKELV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..438] PSI-BLAST 104.0 Diaminopimelate decarboxylase LysA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • diaminopimelate decarboxylase activity
    		•  3.58479480906491 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  2.10295722394074 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  1.96192295083077 bayes_pls_golite062009
  • catalytic activity
    		•  1.23611818854966 bayes_pls_golite062009
  • ornithine decarboxylase activity
    		•  0.564318776647641 bayes_pls_golite062009
  • lyase activity
    		•  0.320782640542698 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.14065879331273 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle