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Protein Overview: DCDA_BACSU

General Information:
Name(s) found: DCDA_BACSU [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Diaminopimelate decarboxylase OS=Bacillus subtilis (strain 168) GN=lysA PE=3 SV=5 [Swiss-Prot]
    • Organism: Bacillus subtilis subsp. subtilis str. 168
    Length: 439 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLHGTSRQN QHGHLEIGGV DALYLAEKYG TPLYVYDVAL IRERAKSFKQ AFISAGLKAQ  60
   61 VAYASKAFSS VAMIQLAEEE GLSLDVVSGG ELYTAVAAGF PAERIHFHGN NKSREELRMA 120
  121 LEHRIGCIVV DNFYEIALLE DLCKETGHSI DVLLRITPGV EAHTHDYITT GQEDSKFGFD 180
  181 LHNGQTERAI EQVLQSEHIQ LLGVHCHIGS QIFDTAGFVL AAEKIFKKLD EWRDSYSFVS 240
  241 KVLNLGGGFG IRYTEDDEPL HATEYVEKII EAVKENASRY GFDIPEIWIE PGRSLVGDAG 300
  301 TTLYTVGSQK EVPGVRQYVA VDGGMNDNIR PALYQAKYEA AAANRIGEAH DKTVSIAGKC 360
  361 CESGDMLIWD IDLPEVKEGD LLAVFCTGAY GYSMANNYNR IPRPAVVFVE NGEAHLVVKR 420
  421 ETYEDIVKLD LPFKTGVKQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..439] PSI-BLAST 100.0 Diaminopimelate decarboxylase LysA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • diaminopimelate decarboxylase activity
    		•  3.58479480906491 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  2.10295722394074 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  1.96192295083077 bayes_pls_golite062009
  • catalytic activity
    		•  1.23611818854966 bayes_pls_golite062009
  • ornithine decarboxylase activity
    		•  0.564318776647641 bayes_pls_golite062009
  • lyase activity
    		•  0.320782640542698 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.14065879331273 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle