YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49178142, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	795 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49178142, gi|....

Description	E-value	Query Range	Subject Range
gi\|49480819, gi\|... - gi\|49480819\|ref\|YP_035510.1\| immune inhibitor A [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|218902490, gi... - gi\|218902490\|ref\|YP_002450324.1\| immune inhibitor A metalloprotease InhA1 [Bacillus cereus AH820], g... gi\|118476857, gi... - gi\|118476857\|ref\|YP_894008.1\| immune inhibitor A [Bacillus thuringiensis str. Al Hakam], gi\|11841608... gi\|196022740, gi... - gi\|196046556\|ref\|ZP_03113781.1\| immune inhibitor A metalloprotease InhA1 [Bacillus cereus 03BB108], ... gi\|195992090, gi... - gi\|196035413\|ref\|ZP_03102818.1\| immune inhibitor A metalloprotease InhA1 [Bacillus cereus W], gi\|195...	0.0	[1..795]	[1..795]
gi\|42780470, gi\|... - gi\|42780470\|ref\|NP_977717.1\| immune inhibitor A metalloprotease [Bacillus cereus ATCC 10987], gi\|427...	0.0	[1..795]	[1..796]
gi\|47566168, gi\|... - gi\|47566168\|ref\|ZP_00237196.1\| proteinase VCA0223 [Bacillus cereus G9241], gi\|47556721\|gb\|EAL15052.1...	0.0	[1..795]	[1..795]
gi\|218540951, gi... - gi\|218896315\|ref\|YP_002444726.1\| immune inhibitor A metalloprotease InhA1 [Bacillus cereus G9842], g... gi\|75760670, gi\|... - gi\|75760670\|ref\|ZP_00740697.1\| Immune inhibitor A precursor [Bacillus thuringiensis serovar israelen...	0.0	[1..795]	[1..795]
gi\|52144052, gi\|... - gi\|52144052\|ref\|YP_082776.1\| immune inhibitor A [Bacillus cereus E33L], gi\|51977521\|gb\|AAU19071.1\| i...	0.0	[1..795]	[1..796]
gi\|67866498 - gi\|67866498\|gb\|AAY23289.1\| InhA [Bacillus thuringiensis serovar kurstaki]	0.0	[1..795]	[1..796]
gi\|9858110 - gi\|9858110\|gb\|AAG00998.1\|AF287346_3 immune inhibitor A [Bacillus thuringiensis]	0.0	[1..795]	[1..795]
gi\|163939190, gi... - gi\|89204490\|ref\|ZP_01183067.1\| Peptidase M6, immune inhibitor A [Bacillus weihenstephanensis KBAB4],... gi\|229010670, gi... - gi\|229010670\|ref\|ZP_04167870.1\| Immune inhibitor A [Bacillus mycoides DSM 2048], gi\|228750635\|gb\|EEM...	0.0	[1..795]	[1..795]
gi\|229143987, gi... - gi\|229143987\|ref\|ZP_04272403.1\| Immune inhibitor A [Bacillus cereus BDRD-ST24], gi\|228639384\|gb\|EEK9... gi\|229126698, gi... - gi\|229126698\|ref\|ZP_04255710.1\| Immune inhibitor A [Bacillus cereus BDRD-Cer4], gi\|228656638\|gb\|EEL1... gi\|30019435, gi\|... - gi\|30019435\|ref\|NP_831066.1\| immune inhibitor A precursor [Bacillus cereus ATCC 14579], gi\|29894979\|... gi\|229043122, gi... - gi\|229043122\|ref\|ZP_04190849.1\| Immune inhibitor A [Bacillus cereus AH676], gi\|228726214\|gb\|EEL77444...	0.0	[9..795]	[1..788]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKPFKVLS SIALTAVLGL SFGAGGQSVY AETPVNKTAT SPVDDHLIPE ERLADALKKR  60
   61 GVIDSKASEK ETKKAVEKYV ENKKGENPGK EVTNGDPLTK EASDFVKKVK DAKADTKEKL 120
  121 DKPA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.302	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.276	N/A	N/A	a.64.1	Saposin
View	Download	0.259	N/A	N/A	a.1.1	Globin-like
View	Download	0.253	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.234	N/A	N/A	a.24.1	Apolipoprotein

Predicted Domain #2

Region A:
Residues: [125-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGTPAATGPV RGGLNGKVPT SPAKQKAYNG DVRKDKVLVL LVEYADFKHN NIDKEPGYMY  60
   61 SEDFNKEHYE KMLFGDEPFT LDDGSKIETF KQYYEEQSGG SYTVDGTVTK WLTVPGKAAD 120
  121 YGADAATGHD NKGPKGPRDL VKDALKAAVD SGLDLSEFDQ FDQYDVNGDG NKNQPDGLID 180
  181 HLMIIHAGVG QEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.21467
Match:	PF05547.2
Description:	No description for PF05547.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [318-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGKLGDDAI WSHRWTVGPK PFPIEGTQAK VPYWGGKMAA FDYTIEPEDG AVGVFAHEYG  60
   61 HDLGLPDEYD TQYSGHGEPV QAWSIMSGGS WAGKIAGTTP TSFSPQNKEF FQKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1c7kA
Description:	Zinc protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	3.87713655504947	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	3.50720289959102	bayes_pls_golite062009
metallopeptidase activity	2.55317823694462	bayes_pls_golite062009
endopeptidase activity	2.52973705827479	bayes_pls_golite062009
hydrolase activity	2.30803642767787	bayes_pls_golite062009
metalloendopeptidase activity	1.81132179546381	bayes_pls_golite062009
catalytic activity	1.26162753036584	bayes_pls_golite062009
exopeptidase activity	0.71491631246151	bayes_pls_golite062009

Predicted Domain #4

Region A:
Residues: [432-696]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGGNWANIVE VDYEKLNKGI GLATYLDQSV TKTNRPGMIR VNLPDKDIKT IDPAFGKQYY  60
   61 YSTKGDDLHT KLETPLFDLT NATTAKFDFK SLYEIEAEYD FLEVHAVTED GQQTLIERLG 120
  121 EKANNGNADS TNGKWIDKSY DLSQFKGKKV KLTFDYITDG GLALNGFLLD NASLTVDGKV 180
  181 VFSDDAEGTP QFKLDGFAVS NGTEKKSHNY YVEWRNYAGS DNALKFARGP EYNTGMVVWY 240
  241 ADSAYTDNWV GVHPGHGFLG VVDSH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2c9aA
Description:	Crystal structure of the MAM-Ig module of receptor protein tyrosine phosphatase mu
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antigen binding	0.499330929698492	bayes_pls_golite062009
binding	0.328129861449666	bayes_pls_golite062009

Predicted Domain #5

Region A:
Residues: [697-795]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEAIVGTLNG KPTVESSTRF QIADAAFSFD KTPAWKVVSP TRGTYTYNGL AGVPKFDDSK  60
   61 TYINQQIPDA GRILPNLGLK FEVVGQADDN SAGAVRLYR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: