YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261207, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261207, gi|....

Description	E-value	Query Range	Subject Range
gi\|56419203, gi\|... - gi\|56419203\|ref\|YP_146521.1\| acyl-CoA synthetase [Geobacillus kaustophilus HTA426], gi\|56379045\|dbj\|...	0.0	[1..508]	[1..510]
gi\|2633363, gi\|1... - gi\|2633363\|emb\|CAB12867.1\| yhfL [Bacillus subtilis subsp. subtilis str. 168], gi\|16078091\|ref\|NP_388... gi\|7437856, gi\|2... - gi\|81668895\|sp\|O07610.1\|LCFB_BACSU RecName: Full=Long-chain-fatty-acid--CoA ligase; AltName: Full=Lo...	0.0	[1..507]	[1..511]
gi\|77996178, gi\|... - gi\|78044063\|ref\|YP_360551.1\| long-chain-fatty-acid--CoA ligase [Carboxydothermus hydrogenoformans Z-...	0.0	[2..509]	[28..541]
gi\|42780268, gi\|... - gi\|42780268\|ref\|NP_977515.1\| acyl-CoA synthetase [Bacillus cereus ATCC 10987], gi\|42736187\|gb\|AAS401...	0.0	[1..510]	[1..510]
gi\|52079510, gi\|... - gi\|52784875\|ref\|YP_090704.1\| acyl-CoA synthetase [Bacillus licheniformis ATCC 14580], gi\|52347377\|gb...	0.0	[1..507]	[1..509]
gi\|49328641, gi\|... - gi\|49477085\|ref\|YP_035342.1\| acyl-CoA synthetase [Bacillus thuringiensis serovar konkukian str. 97-2...	0.0	[1..510]	[1..510]
gi\|52144221, gi\|... - gi\|52144221\|ref\|YP_082607.1\| acyl-CoA synthetase [Bacillus cereus E33L], gi\|51977690\|gb\|AAU19240.1\| ...	0.0	[1..510]	[1..510]
gi\|163939004, gi... - gi\|89205642\|ref\|ZP_01184210.1\| AMP-dependent synthetase and ligase [Bacillus weihenstephanensis KBAB...	0.0	[1..510]	[1..510]
gi\|74493140, gi\|... - gi\|75759373\|ref\|ZP_00739469.1\| Long-chain-fatty-acid--CoA ligase [Bacillus thuringiensis serovar isr... gi\|228904011, gi... - gi\|228904011\|ref\|ZP_04068117.1\| Long-chain-fatty-acid--CoA ligase [Bacillus thuringiensis IBL 4222],...	0.0	[1..510]	[1..510]
gi\|55981432, gi\|... - gi\|55981432\|ref\|YP_144729.1\| long-chain-fatty-acid--CoA ligase [Thermus thermophilus HB8], gi\|557728...	0.0	[1..509]	[26..557]

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Predicted Domain #1

Region A:
Residues: [1-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLVQSLAET AKKKGDKPAY IFMDQSVSYD QLNKMVTRFS SNLAEMGIGK GDNVALVVGN  60
   61 SPHFLVGLYG TMKAGATVIP VNPIYTADEM HYILQNGDVK TIIVLDVLLP VIQSLTTRLP 120
  121 SLENIIICET SSDFNHTETE KMKTFTRMIG AGDLTYEGPE LDEEDVAVIL YTSGTTGKPK 180
  181 GAMLTHKNLY SNASDVASYL QYTADDRVVA ALPMFHVFCL TVAVNAPIVN GATILMLPKF 240
  241 SPKEVFRICR TYEPTIFAGV PTMYNYLYLF EEASAEDVKT LRLCISGGAS MPVALLQNFE 300
  301 KRFDVIVSEG YGLSEASPVT CFNPLDRPRK PGSIGTNIWH VENKIVNELG EEVPVGAVGE 360
  361 LIVRGPNVMK GYYNAPEDTA ATLKDGWLYT GDLAKMDEEG YFYIVDRKKD IVLVGGYNVY 420
  421 PREVEEVLYM HESVAEVVVI GVPDENLGEA VRAYVVLKQT NVTEEELMHY CTLHLAKYKV 480
  481 PKSIEFLTEL PKNTTGKLLR RALREKAMQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	1ultA
Description:	Crystal structure of tt0168 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-sulfur bonds	5.10123876514454	bayes_pls_golite062009
fatty acid ligase activity	4.83067429373059	bayes_pls_golite062009
long-chain fatty acid-CoA ligase activity	4.72692389032116	bayes_pls_golite062009
acetate-CoA ligase activity	4.48129067128523	bayes_pls_golite062009
acid-thiol ligase activity	4.28278725989432	bayes_pls_golite062009
CoA-ligase activity	4.12850865352867	bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	2.74744781333102	bayes_pls_golite062009
Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	2.74744781333102	bayes_pls_golite062009
luciferin monooxygenase activity	2.67396462766343	bayes_pls_golite062009
ligase activity	2.49556073715112	bayes_pls_golite062009
transcription regulator activity	2.31193176808353	bayes_pls_golite062009
catalytic activity	1.83545185797733	bayes_pls_golite062009
binding	1.5312519256537	bayes_pls_golite062009
transcription repressor activity	1.2638869228049	bayes_pls_golite062009
monooxygenase activity	0.725493998442316	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.464663038956639	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: