YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261186, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	705 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261186, gi|....

Description	E-value	Query Range	Subject Range
gi\|47555742, gi\|... - gi\|47567547\|ref\|ZP_00238258.1\| penicillin-binding protein 2A [Bacillus cereus G9241], gi\|47555742\|gb...	0.0	[1..705]	[42..746]
gi\|167640258, gi... - gi\|167640258\|ref\|ZP_02398524.1\| penicillin-binding protein 1 [Bacillus anthracis str. A0193], gi\|167... gi\|167635384, gi... - gi\|167635384\|ref\|ZP_02393698.1\| penicillin-binding protein 1 [Bacillus anthracis str. A0442], gi\|167... gi\|164712394, gi... - gi\|165871817\|ref\|ZP_02216460.1\| penicillin-binding protein 1 [Bacillus anthracis str. A0488], gi\|164... gi\|225863028, gi... - gi\|225863028\|ref\|YP_002748406.1\| penicillin-binding protein 1 [Bacillus cereus 03BB102], gi\|22578806... gi\|254725545 - gi\|254725545\|ref\|ZP_05187327.1\| penicillin-binding protein 1 [Bacillus anthracis str. A1055] gi\|254682754 - gi\|254682754\|ref\|ZP_05146615.1\| penicillin-binding protein 1 [Bacillus anthracis str. CNEVA-9066] gi\|228833473, gi... - gi\|228926220\|ref\|ZP_04089295.1\| hypothetical protein bthur0010_9400 [Bacillus thuringiensis serovar ... gi\|227004356, gi... - gi\|227816080\|ref\|YP_002816089.1\| penicillin-binding protein 1 [Bacillus anthracis str. CDC 684], gi\|... gi\|254753524 - gi\|254753524\|ref\|ZP_05205560.1\| penicillin-binding protein 1 [Bacillus anthracis str. Vollum] gi\|254740185 - gi\|254740185\|ref\|ZP_05197877.1\| penicillin-binding protein 1 [Bacillus anthracis str. Kruger B] gi\|254734171 - gi\|254734171\|ref\|ZP_05191884.1\| penicillin-binding protein 1 [Bacillus anthracis str. Western North ... gi\|49328633, gi\|... - gi\|49477077\|ref\|YP_035322.1\| penicillin-binding protein 1 [Bacillus thuringiensis serovar konkukian ... gi\|196031768, gi... - gi\|196037526\|ref\|ZP_03104837.1\| penicillin-binding protein 1 [Bacillus cereus NVH0597-99], gi\|196031... gi\|190566804, gi... - gi\|190566804\|ref\|ZP_03019721.1\| penicillin-binding protein 1 [Bacillus anthracis Tsiankovskii-I], gi... gi\|172080885, gi... - gi\|177654178\|ref\|ZP_02936151.1\| penicillin-binding protein 1 [Bacillus anthracis str. A0174], gi\|172... gi\|170667933, gi... - gi\|170688038\|ref\|ZP_02879250.1\| penicillin-binding protein 1 [Bacillus anthracis str. A0465], gi\|170...	0.0	[1..705]	[1..705]
gi\|228913752, gi... - gi\|228913752\|ref\|ZP_04077378.1\| hypothetical protein bthur0012_9900 [Bacillus thuringiensis serovar ... gi\|52144243, gi\|... - gi\|52144243\|ref\|YP_082586.1\| penicillin-binding protein 1 [Bacillus cereus E33L], gi\|51977712\|gb\|AAU...	0.0	[1..705]	[1..705]
gi\|42736160, gi\|... - gi\|42780241\|ref\|NP_977488.1\| penicillin-binding protein 1 [Bacillus cereus ATCC 10987], gi\|42736160\|...	0.0	[1..705]	[42..746]
PBPF_BACSU - Penicillin-binding protein 1F OS=Bacillus subtilis GN=pbpF PE=2 SV=1 gi\|16078075, gi\|... - gi\|2633347\|emb\|CAB12851.1\| penicillin-binding protein 2C [Bacillus subtilis subsp. subtilis str. 168...	0.0	[11..705]	[16..709]
gi\|75758789, gi\|... - gi\|75758789\|ref\|ZP_00738903.1\| Multimodular transpeptidase-transglycosylase PBP 2C [Bacillus thuring... gi\|228855626, gi... - gi\|228904030\|ref\|ZP_04068136.1\| hypothetical protein bthur0014_51820 [Bacillus thuringiensis IBL 422...	0.0	[1..705]	[1..705]
gi\|229126477, gi... - gi\|229126477\|ref\|ZP_04255491.1\| hypothetical protein bcere0015_9340 [Bacillus cereus BDRD-Cer4], gi\|... gi\|30019222, gi\|... - gi\|30019222\|ref\|NP_830853.1\| multimodular transpeptidase-transglycosylase PBP 2C [Bacillus cereus AT...	0.0	[1..705]	[1..705]
gi\|163861181, gi... - gi\|89205623\|ref\|ZP_01184191.1\| Penicillin-binding protein 1A [Bacillus weihenstephanensis KBAB4], gi...	0.0	[1..705]	[42..746]
gi\|52079498, gi\|... - gi\|52784863\|ref\|YP_090692.1\| PbpF [Bacillus licheniformis ATCC 14580], gi\|52347365\|gb\|AAU39999.1\| Pb...	0.0	[2..705]	[3..705]
gi\|152974637, gi... - gi\|89201713\|ref\|ZP_01180449.1\| Penicillin-binding protein 1A [Bacillus cereus subsp. cytotoxis NVH 3...	0.0	[1..705]	[1..705]

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Predicted Domain #1

Region A:
Residues: [1-705]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVKWTLLG GLATLVLAIV LYKLIVLAGG YMMDEKQLVF HSSSRIVDQK GKEITKLYVE  60
   61 NRDLVPIEQI PKYVQQAFVA VEDSRFYEHQ GIDYPSIFRA LYKDTLAGEK VEGGSTITQQ 120
  121 LAKNVFLTRE KTFTRKLKEV AISLQLEQKY TKQQILEMYM NHIYFGHGAY GIQAAAKLYF 180
  181 NKNVEDLTVE EGAMLAGLPK SPNGYSPYFS PEKSKERRDL VLSLMHKQGY LTAEESVRYQ 240
  241 GKTIALYKNL DENELAYMPY IDMVIDEAAR LYGLSHQEVL RGGYTFVVPM DEKIQKVAYN 300
  301 QFQDARNFPG KEEGAQGAFL LMDNRTGGIK AAIGGRKYVP RGFNRVFAKR QPGSVLKPLI 360
  361 VYAPALETKK YNPYSLLTNE RHSFEGYEPR NYNREYSKEI TMYDAILESA NVPAVSLLNE 420
  421 LGVEEGKQYL EKGNVHIADA GLSTALGGLK NGVSTFDLVK MYRAFLANGD IVEPHVIDKV 480
  481 LNRHGAVIGE SPKVETKIFS KQTAWYMTKM LEGVVKEGTA KAGVYSGALA GKTGTTSLPN 540
  541 DDNGARDMWF VGYTPNLVGA VWIGYDRIDK EHKLQGESAS ATKLFKKILT KANVEQKEQF 600
  601 RKPEGVETIG APIRLRKIED VKMKLAFSPF GLFKAKLSWT PLPDERIMYR IYRVENGIHT 660
  661 HVGTVNGAGE YEEKFVNIFS KPSFYVVPYN TQTNREGEKS KVAKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	2oluA
Description:	No description for 2oluA was found.

Predicted functions:

Term	Confidence	Notes
serine-type D-Ala-D-Ala carboxypeptidase activity	3.37745387761459	bayes_pls_golite062009
penicillin binding	3.16077730467133	bayes_pls_golite062009
serine-type carboxypeptidase activity	3.02516915958448	bayes_pls_golite062009
serine-type exopeptidase activity	2.98959517344587	bayes_pls_golite062009
carboxypeptidase activity	2.34154596924818	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
drug binding	2.00354593744547	bayes_pls_golite062009
exopeptidase activity	1.66768404710194	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
peptidase activity	0.0621279448114327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: