YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260462, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260462, gi|....

Description	E-value	Query Range	Subject Range
gi\|114590613 - gi\|114590613\|ref\|XP_516898.2\| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Pan trogl...	3.0E-96	[2..374]	[174..590]
gi\|109043037 - gi\|109043037\|ref\|XP_001096717.1\| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alp...	9.0E-96	[2..374]	[115..531]
gi\|186685989, gi... - gi\|23129462\|ref\|ZP_00111289.1\| COG0439: Biotin carboxylase [Nostoc punctiforme PCC 73102], gi\|186685...	1.0E-95	[6..369]	[1..407]
gi\|46119399, gi\|... - gi\|67923410\|ref\|ZP_00516889.1\| Acetyl-CoA carboxylase, biotin carboxylase [Crocosphaera watsonii WH ...	3.0E-95	[5..369]	[1..408]
gi\|62089054 - gi\|62089054\|dbj\|BAD92974.1\| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) variant [Homo sapiens]	4.0E-95	[2..374]	[59..475]
gi\|75906739, gi\|... - gi\|75906739\|ref\|YP_321035.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Anabaena variabilis ...	5.0E-95	[6..369]	[1..407]
gi\|25293960 - pir\|\|AH1923 biotin carboxylase [imported] - Nostoc sp. (strain PCC 7120) gi\|289133, gi\|10... - gi\|289133\|gb\|AAB51770.1\| biotin carboxylase, pir\|\|A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena... ACCC_NOSS1 - Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1	6.0E-95	[6..369]	[1..407]

Back

Predicted Domain #1

Region A:
Residues: [1-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRIILPGKT IGIIGGGQLG RMMALAAKEM GYKIAVLDPT KNSPCAQVAD IEIVASYDDL  60
   61 KAIQHLAEIS DVVTYEFENI DYRCLQWLEK HAYLPQGSQL LSKTQNRFTE KNAIEKAGLP 120
  121 VATYRLVQNQ EQLTEAIAEL SYPSVLKTTT GGYDGKGQVV LRSEADVDEA RKLANAAECI 180
  181 LEKWVPFEKE VSVIVIRSVS GETKVFPVAE NIHVNNILHE SIVPARITEE LSQKAIAYAK 240
  241 VLADELELVG TLAVEMFATA DGEIYINELA PRPHNSGHYT QDACETSQFG QHIRAICNLP 300
  301 LGETNLLKPV VMVNILGEHI EGVLRQVNRL TGCYLHLYGK EEAKAQRKMG HVNILNDNIE 360
  361 VALEKAKSLH IWDHQEQLLE GKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.221849
Match:	1kj8A
Description:	Glycinamide ribonucleotide transformylase PurT, C-domain; Glycinamide ribonucleotide transformylase PurT, N-domain; Glycinamide ribonucleotide transformylase PurT, domain 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoribosylaminoimidazole carboxylase activity	8.30252180826751	bayes_pls_golite062009
carboxy-lyase activity	4.46679646341684	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	3.45358843752722	bayes_pls_golite062009
carbamoyl-phosphate synthase activity	2.80055235272563	bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	2.72231827182887	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
ligase activity	2.47642734831155	bayes_pls_golite062009
phosphoribosylamine-glycine ligase activity	1.37477732460326	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.11645327303429	bayes_pls_golite062009
CoA carboxylase activity	0.319428284569229	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.140669118443663	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: