YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998463, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998463, gi|....

Description	E-value	Query Range	Subject Range
gi\|33865649, gi\|... - gi\|33865649\|ref\|NP_897208.1\| ribulose-phosphate 3-epimerase [Synechococcus sp. WH 8102], gi\|33632819...	213.0	[0..4]	[221..39]
gi\|71674917, gi\|... - gi\|71674917\|ref\|ZP_00672663.1\| Ribulose-phosphate 3-epimerase [Trichodesmium erythraeum IMS101], gi\|...	212.0	[0..4]	[217..11]
gi\|47569486, gi\|... - gi\|47569486\|ref\|ZP_00240166.1\| ribulose-phosphate 3-epimerase [Bacillus cereus G9241], gi\|47553815\|g...	212.0	[0..1]	[213..1]
gi\|25292434 - pir\|\|AD1904 ribulose-phosphate 3-epimerase [imported] - Nostoc sp. (strain PCC 7120) gi\|17130127, gi\|... - gi\|17228277\|ref\|NP_484825.1\| ribulose-phosphate 3-epimerase [Nostoc sp. PCC 7120], gi\|17130127\|dbj\|B...	211.0	[0..4]	[217..12]
gi\|53735566, gi\|... - gi\|67921815\|ref\|ZP_00515332.1\| Ribulose-phosphate 3-epimerase [Crocosphaera watsonii WH 8501], gi\|67...	211.0	[0..4]	[217..10]
gi\|75910871, gi\|... - gi\|75910871\|ref\|YP_325167.1\| ribulose-phosphate 3-epimerase [Anabaena variabilis ATCC 29413], gi\|757...	210.0	[0..4]	[217..12]
gi\|186681977, gi... - gi\|23126808\|ref\|ZP_00108694.1\| COG0036: Pentose-5-phosphate-3-epimerase [Nostoc punctiforme PCC 7310...	209.0	[0..4]	[217..12]
gi\|113953634, gi... - gi\|113953634\|ref\|YP_730887.1\| ribulose-phosphate 3-epimerase [Synechococcus sp. CC9311], gi\|11388098...	209.0	[0..4]	[217..8]
gi\|78212783, gi\|... - gi\|78212783\|ref\|YP_381562.1\| ribulose-phosphate 3-epimerase [Synechococcus sp. CC9605], gi\|78197242\|...	209.0	[0..4]	[221..8]
gi\|40074233, gi\|... - gi\|41057048\|ref\|NP_957651.1\| ribulose-phosphate 3-epimerase [Bacillus methanolicus], gi\|40074233\|gb\|...	209.0	[0..1]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIAPSILS ADFSRLGDEV RAVAAAGADY IHVDVMDGHF VPNITIGPLV VEAVRRVTEL  60
   61 PLDVHLMIEH PDRYIPDFAA AGSDIIVVHA EASTHLHRTI QLIKSLGKKA GVSLNPATPL 120
  121 NCLDYVLEDL DLVLLMTVNP GFGGQSFIEA CIPKIQSLRA MLDRRGCEAE LEVDGGVKID 180
  181 NIARIAHAGA DVFVAGSAIF GSPDYEATIK ELKRRAKEPI L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.30103
Match:	1tqjA
Description:	Crystal structure of D-ribulose 5-phosphate 3-epimerase from Synechocystis to 1.6 angstrom resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribulose-phosphate 3-epimerase activity	3.28372503209224	bayes_pls_golite062009
catalytic activity	2.44231061702877	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.86158562896415	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	1.36492964250879	bayes_pls_golite062009
isomerase activity	0.935800409577999	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.764608070506109	bayes_pls_golite062009
orotidine-5'-phosphate decarboxylase activity	0.758594564254247	bayes_pls_golite062009
binding	0.595171555788202	bayes_pls_golite062009
racemase and epimerase activity	0.288948763149344	bayes_pls_golite062009
carboxy-lyase activity	0.1100847613283	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: