YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982293, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982293, gi|....

Description	E-value	Query Range	Subject Range
gi\|67518713, gi\|... - gi\|92114086\|ref\|YP_574014.1\| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043], gi\|...	118.0	[0..4]	[100..77]
gi\|113529015, gi... - gi\|116694516\|ref\|YP_728727.1\| flagellar motor switch protein/type III secretory pathway protein [Ral...	113.0	[0..4]	[100..51]
gi\|84363320 - gi\|84363320\|ref\|ZP_00987910.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [B...	113.0	[0..4]	[100..66]
gi\|89098631, gi\|... - gi\|89098631\|ref\|ZP_01171513.1\| flagellar motor switch protein [Bacillus sp. NRRL B-14911], gi\|890865...	113.0	[0..7]	[100..314]
gi\|226944504, gi... - gi\|67154570\|ref\|ZP_00416315.1\| Surface presentation of antigens (SPOA) protein [Azotobacter vineland... gi\|23102572, gi\|... - gi\|67154570\|ref\|ZP_00416315.1\| Surface presentation of antigens (SPOA) protein [Azotobacter vineland...	113.0	[0..4]	[100..57]
gi\|116328500, gi... - gi\|116328500\|ref\|YP_798220.1\| endoflagellar motor switch protein [Leptospira borgpetersenii serovar ...	113.0	[0..4]	[98..255]
gi\|24196414, gi\|... - gi\|24215313\|ref\|NP_712794.1\| flagellar motor switch protein fliY [Leptospira interrogans serovar Lai... gi\|45657248, gi\|... - gi\|45657248\|ref\|YP_001334.1\| flagellar motor switch protein [Leptospira interrogans serovar Copenhag...	113.0	[0..4]	[98..256]
gi\|116331230, gi... - gi\|116331230\|ref\|YP_800948.1\| endoflagellar motor switch protein [Leptospira borgpetersenii serovar ...	112.0	[0..4]	[98..255]
gi\|36785292, gi\|... - gi\|37525863\|ref\|NP_929207.1\| flagellar motor switch protein FliN [Photorhabdus luminescens subsp. la...	112.0	[0..4]	[100..41]
gi\|77975714 - gi\|77975714\|ref\|ZP_00831248.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [Y...	112.0	[0..4]	[100..40]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFTKEETK DGELDRKNLE FILDIPLQLT VELGRTKILV KDVLQLNQGA VVELTKLAGE  60
   61 PLDVFVNSKL VARGEAVVVN EKFGVRLVDI VSPNERVEKV L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.30103
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: