YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP6_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP6_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|629605, gi\|515963 - pir\|\|S42658 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 precursor - radish mitochondri...	199.0	[0..5]	[228..176]
ATP61_ARATH - ATP synthase subunit a-1 OS=Arabidopsis thaliana GN=ATP6-1 PE=2 SV=2	186.0	[0..5]	[228..134]
gi\|563548, gi\|10... - gi\|563548\|emb\|CAA57790.1\| atp6 [Helianthus annuus], pir\|\|S52014 H+-transporting two-sector ATPase (E...	180.0	[0..1]	[228..182]
ATPI_MESVI - ATP synthase subunit a, chloroplastic OS=Mesostigma viride GN=atpI PE=3 SV=1	178.0	[0..1]	[229..12]
gi\|25006060, gi\|... - gi\|25057821\|ref\|NP_740054.1\| ATP synthase F0 subunit 6 [Carangoides armatus], gi\|25006060\|dbj\|BAC236...	177.0	[0..6]	[225..1]
gi\|32346624 - gi\|32346624\|gb\|AAP75198.1\| ATP synthase 6 [Acanthochromis polyacanthus]	177.0	[0..6]	[225..1]
gi\|32346855 - gi\|32346855\|gb\|AAP75352.1\| ATP synthase 6 [Dischistodus melanotus]	177.0	[0..6]	[225..1]
gi\|32346984, gi\|... - gi\|32346987\|gb\|AAP75440.1\| ATP synthase 6 [Pomacentrus nagasakiensis], gi\|32346984\|gb\|AAP75438.1\| AT...	176.0	[0..6]	[225..1]
ATP6_RHOS1 - ATP synthase subunit a OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpB PE=3 SV=1 ATP6_RHOS4 - ATP synthase subunit a OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) ...	176.0	[0..21]	[229..42]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHPLLFLQF FRKLLEPLHI SEAGADAIAY TWLIIVCLLI VSLIATKALK AVPTGMQNFM  60
   61 EVVIGGIENM VEETMGEKGK PYFPLIATLA LFVLVSNLIG LIPGFFPPTA NLNTTAACAV 120
  121 IVFLSTHIVG IKKHGFHYLQ HFMGPIWWLA PLMFFIEIIG HLSRPLSLSL RLFGNMNGHE 180
  181 LVLMIFFALA PFLVPLPMML MGVLVSFIQA FVFMLLAMIY IQGSLEEAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1c17M
Description:	F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.916062574431	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.3765277511271	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6266555949852	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5141571800158	bayes_pls_golite062009
cation transmembrane transporter activity	6.7755175807552	bayes_pls_golite062009
ion transmembrane transporter activity	6.66886754588748	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.24164033661356	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.34968915140418	bayes_pls_golite062009
transporter activity	4.44683838532142	bayes_pls_golite062009
substrate-specific transporter activity	4.37473908570954	bayes_pls_golite062009
transmembrane transporter activity	4.36056336888635	bayes_pls_golite062009
cation-transporting ATPase activity	3.33662712450334	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.11865103919948	bayes_pls_golite062009
primary active transmembrane transporter activity	0.517601509369888	bayes_pls_golite062009
active transmembrane transporter activity	0.511311810386796	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.510137962484563	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.476924701765357	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.473395661531507	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.473285892250811	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.242742762516199	bayes_pls_golite062009
pyrophosphatase activity	0.201337507209354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.191294406773539	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.188721983770471	bayes_pls_golite062009
ATPase activity, coupled	0.110491424400621	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: