YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995210, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995210, gi|....

Description	E-value	Query Range	Subject Range
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	197.0	[0..1]	[191..1]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	197.0	[0..1]	[191..1]
gi\|114675154 - gi\|114675154\|ref\|XP_001147785.1\| PREDICTED: similar to GTP-binding protein RAB11B [Pan troglodytes]	197.0	[0..1]	[195..131]
gi\|109081641 - gi\|109081641\|ref\|XP_001103732.1\| PREDICTED: similar to RAB11a, member RAS oncogene family [Macaca mu...	196.0	[0..1]	[195..89]
gi\|157108598, gi... - gi\|157108598\|ref\|XP_001650303.1\| ras-related protein Rab-1A, putative [Aedes aegypti], gi\|108879268\|...	195.0	[0..2]	[191..3]
gi\|148230336, gi... - gi\|27924279\|gb\|AAH45014.1\| Rab1-prov protein [Xenopus laevis], gi\|148230336\|ref\|NP_001080138.1\| RAB1... gi\|52345478, gi\|... - gi\|52345478\|ref\|NP_001004787.1\| RAB1A, member RAS oncogene family [Xenopus (Silurana) tropicalis], g...	195.0	[0..1]	[194..1]
RIC1_ORYSA - (P40392) Ras-related protein RIC1	195.0	[0..8]	[195..4]
gi\|37360618 - gi\|37360618\|dbj\|BAC98287.1\| mKIAA3012 protein [Mus musculus]	195.0	[0..1]	[194..49]
gi\|61365844, gi\|... - gi\|61365844\|gb\|AAX42772.1\| RAB1A member RAS oncogene family [synthetic construct], gi\|54695924\|gb\|AA...	195.0	[0..1]	[194..1]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	195.0	[0..2]	[191..53]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFINYASRE INCKIVYYGP GLCGKTTNLQ YVYQKTAPEA KGKMISLATE TERTLFFDFL  60
   61 PLALGEIRGF KTRFHLYTVP GQVFYDASRK LILKGVDGVV FVADSQEERM DANIESLENL 120
  121 AVNLKEQGYD LEKIPFVIQY NKRDLPGIVP VEELRRELNH RNVPDFEACA ATGEGVFETL 180
  181 KAVAKLILID LKKGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.154902
Match:	2folA
Description:	Crystal structure of human RAB1A in complex with GDP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	1.69240737024755	bayes_pls_golite062009
pyrophosphatase activity	1.65296291878002	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.64318297340116	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.64169398852165	bayes_pls_golite062009
ATPase activity	1.20060977637766	bayes_pls_golite062009
transporter activity	1.14815595550467	bayes_pls_golite062009
ATPase activity, coupled	1.08141765801535	bayes_pls_golite062009
transmembrane transporter activity	1.01232806016411	bayes_pls_golite062009
active transmembrane transporter activity	0.92246823619313	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.89546790004613	bayes_pls_golite062009
primary active transmembrane transporter activity	0.89065853471483	bayes_pls_golite062009
hydrolase activity	0.875592967682638	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.8668136831732	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.86536264587818	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.86511385357843	bayes_pls_golite062009
binding	0.855534295206446	bayes_pls_golite062009
catalytic activity	0.828877635849693	bayes_pls_golite062009
purine ribonucleotide binding	0.3056113353665	bayes_pls_golite062009
ribonucleotide binding	0.30512981340046	bayes_pls_golite062009
purine nucleotide binding	0.30259037403175	bayes_pls_golite062009
nucleotide binding	0.28998663538132	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: