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View Structure Prediction Details

Protein: gi|33865649, gi|...
Organism: Synechococcus sp. WH 8102
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33865649, gi|....

Description E-value Query
Range
Subject
Range
gi|15027997, gi|... - gi|9757862|dbj|BAB08496.1| ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana], gi|4102703|gb|AA...
212.0 [0..11] [258..32]

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Predicted Domain #1
Region A:
Residues: [1-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQWISTPER GSLYQWLPRS LKSPRIPRYF YMSTKPLVIS PSILSADFSR LGDEVKAVDE  60
   61 AGADWIHVDV MDGRFVPNIT IGPLIVEALR PVTQKPLDVH LMIVEPEKYV PDFAKAGADI 120
  121 ISVQVEACPH LHRNLAQIKD LGKLAGAVLN PSTRLDTLEY CLELCDLVLI MSVNPGFGGQ 180
  181 SFIENQVQKI SDLRRMCDER GLDPWIEVDG GVKAGNAWKV IEAGANAIVS GSGVFNQPDY 240
  241 AEAIKGIRNS SSKEAVLV

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Detection Method: PSI-BLAST
Confidence: 50.39794
Match: 1rpxA
Description: D-ribulose-5-phosphate 3-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribulose-phosphate 3-epimerase activity 3.28372503209224 bayes_pls_golite062009
catalytic activity 2.44231061702877 bayes_pls_golite062009
intramolecular oxidoreductase activity 1.86158562896415 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 1.36492964250879 bayes_pls_golite062009
isomerase activity 0.935800409577999 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.764608070506109 bayes_pls_golite062009
orotidine-5'-phosphate decarboxylase activity 0.758594564254247 bayes_pls_golite062009
binding 0.595171555788202 bayes_pls_golite062009
racemase and epimerase activity 0.288948763149344 bayes_pls_golite062009
carboxy-lyase activity 0.1100847613283 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle