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View Structure Prediction Details

Protein: ATP6_SHEON
Organism: Shewanella oneidensis MR-1
Length: 264 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP6_SHEON.

Description E-value Query
Range		 Subject
Range
gi|629605, gi|515963 - pir||S42658 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 precursor - radish mitochondri...
 210.0 [0..10] [264..175]
ATP6_SHESA - ATP synthase subunit a OS=Shewanella sp. (strain ANA-3) GN=atpB PE=3 SV=1
 203.0 [0..1] [264..1]
ATP6_SHELP - ATP synthase subunit a OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=atpB PE=3 SV=1
 202.0 [0..1] [264..1]
ATP6_SHEAM - ATP synthase subunit a OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpB PE=3 SV=1
 202.0 [0..1] [264..1]
ATP6_SHESR - ATP synthase subunit a OS=Shewanella sp. (strain MR-7) GN=atpB PE=3 SV=1
ATP6_SHESM - ATP synthase subunit a OS=Shewanella sp. (strain MR-4) GN=atpB PE=3 SV=1
 201.0 [0..1] [264..1]
gi|149675733 - gi|149675733|dbj|BAF64747.1| FOF1-type ATP synthase a subunit [Shewanella livingstonensis]
ATP6_SHEFN - ATP synthase subunit a OS=Shewanella frigidimarina (strain NCIMB 400) GN=atpB PE=3 SV=1
 201.0 [0..1] [264..1]
ATP6_SHEB5 - ATP synthase subunit a OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=atpB PE=3 SV=1
ATP6_SHEB2 - ATP synthase subunit a OS=Shewanella baltica (strain OS223) GN=atpB PE=3 SV=1
ATP6_SHEB9 - ATP synthase subunit a OS=Shewanella baltica (strain OS195) GN=atpB PE=3 SV=1
 199.0 [0..1] [264..1]
ATP6_SHEDO - ATP synthase subunit a OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=atp...
 199.0 [0..1] [264..1]
gi|90581145, gi|... - gi|90581145|ref|ZP_01236944.1| ATP synthase subunit A [Vibrio angustum S14], gi|90437666|gb|EAS62858...
 198.0 [0..1] [263..1]
gi|90325217, gi|... - gi|90413748|ref|ZP_01221736.1| ATP synthase subunit A [Photobacterium profundum 3TCK], gi|90325217|g...
 197.0 [0..1] [263..1]

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Predicted Domain #1
Region A:
Residues: [1-82] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGEALTP QGYIQHHLTN LHVGEGFWTW HIDSLFFSVG LGVLFLWIFR SVGKKATSGV  60
   61 PGKLQCFIEM IVEFVDNSVK ES

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-264] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHGRNALIAP LALTIFMWVF MMNFMDMIPV DWLPWLASLA GIPYLKVVPT TDVNITFSLA  60
   61 IGVFVLIIYY SIKVKGVSGF VKELTLQPFN HKAMIPVNLL LETVTLIAKP ISLALRLFGN 120
  121 LYAGELIFIL IALMYGTNLL LSSLGVTLQL GWLIFHILVI TLQAFIFMML TIVYLSMAHE 180
  181 DH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.69897
Match: 1c17M
Description: F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 14.916062574431 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 13.3765277511271 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 11.6266555949852 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 10.5141571800158 bayes_pls_golite062009
cation transmembrane transporter activity 6.7755175807552 bayes_pls_golite062009
ion transmembrane transporter activity 6.66886754588748 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 6.24164033661356 bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism 5.34968915140418 bayes_pls_golite062009
transporter activity 4.44683838532142 bayes_pls_golite062009
substrate-specific transporter activity 4.37473908570954 bayes_pls_golite062009
transmembrane transporter activity 4.36056336888635 bayes_pls_golite062009
cation-transporting ATPase activity 3.33662712450334 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 1.11865103919948 bayes_pls_golite062009
primary active transmembrane transporter activity 0.517601509369888 bayes_pls_golite062009
active transmembrane transporter activity 0.511311810386796 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.510137962484563 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.476924701765357 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.473395661531507 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.473285892250811 bayes_pls_golite062009
catalytic activity 0.276917867171685 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.242742762516199 bayes_pls_golite062009
pyrophosphatase activity 0.201337507209354 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.191294406773539 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.188721983770471 bayes_pls_golite062009
ATPase activity, coupled 0.110491424400621 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle