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View Structure Prediction Details

Protein: ATP6_SHEON
Organism: Shewanella oneidensis MR-1
Length: 264 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP6_SHEON.

Description E-value Query
Range		 Subject
Range
gi|629605, gi|515963 - pir||S42658 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 precursor - radish mitochondri...
 210.0 [0..10] [264..175]
ATP6_SHESA - ATP synthase subunit a OS=Shewanella sp. (strain ANA-3) GN=atpB PE=3 SV=1
 203.0 [0..1] [264..1]
ATP6_SHELP - ATP synthase subunit a OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=atpB PE=3 SV=1
 202.0 [0..1] [264..1]
ATP6_SHEAM - ATP synthase subunit a OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpB PE=3 SV=1
 202.0 [0..1] [264..1]
ATP6_SHESR - ATP synthase subunit a OS=Shewanella sp. (strain MR-7) GN=atpB PE=3 SV=1
ATP6_SHESM - ATP synthase subunit a OS=Shewanella sp. (strain MR-4) GN=atpB PE=3 SV=1
 201.0 [0..1] [264..1]
gi|149675733 - gi|149675733|dbj|BAF64747.1| FOF1-type ATP synthase a subunit [Shewanella livingstonensis]
ATP6_SHEFN - ATP synthase subunit a OS=Shewanella frigidimarina (strain NCIMB 400) GN=atpB PE=3 SV=1
 201.0 [0..1] [264..1]
ATP6_SHEB5 - ATP synthase subunit a OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=atpB PE=3 SV=1
ATP6_SHEB2 - ATP synthase subunit a OS=Shewanella baltica (strain OS223) GN=atpB PE=3 SV=1
ATP6_SHEB9 - ATP synthase subunit a OS=Shewanella baltica (strain OS195) GN=atpB PE=3 SV=1
 199.0 [0..1] [264..1]
ATP6_SHEDO - ATP synthase subunit a OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=atp...
 199.0 [0..1] [264..1]
gi|90581145, gi|... - gi|90581145|ref|ZP_01236944.1| ATP synthase subunit A [Vibrio angustum S14], gi|90437666|gb|EAS62858...
 198.0 [0..1] [263..1]
gi|90325217, gi|... - gi|90413748|ref|ZP_01221736.1| ATP synthase subunit A [Photobacterium profundum 3TCK], gi|90325217|g...
 197.0 [0..1] [263..1]

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Predicted Domain #1
Region A:
Residues: [1-82] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGEALTP QGYIQHHLTN LHVGEGFWTW HIDSLFFSVG LGVLFLWIFR SVGKKATSGV  60
   61 PGKLQCFIEM IVEFVDNSVK ES

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-264] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHGRNALIAP LALTIFMWVF MMNFMDMIPV DWLPWLASLA GIPYLKVVPT TDVNITFSLA  60
   61 IGVFVLIIYY SIKVKGVSGF VKELTLQPFN HKAMIPVNLL LETVTLIAKP ISLALRLFGN 120
  121 LYAGELIFIL IALMYGTNLL LSSLGVTLQL GWLIFHILVI TLQAFIFMML TIVYLSMAHE 180
  181 DH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.69897
Match: 1c17M
Description: F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 14.916062574431 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 13.3765277511271 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 11.6266555949852 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 10.5141571800158 bayes_pls_golite062009
cation transmembrane transporter activity 6.7755175807552 bayes_pls_golite062009
ion transmembrane transporter activity 6.66886754588748 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 6.24164033661356 bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism 5.34968915140418 bayes_pls_golite062009
transporter activity 4.44683838532142 bayes_pls_golite062009
substrate-specific transporter activity 4.37473908570954 bayes_pls_golite062009
transmembrane transporter activity 4.36056336888635 bayes_pls_golite062009
cation-transporting ATPase activity 3.33662712450334 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 1.11865103919948 bayes_pls_golite062009
primary active transmembrane transporter activity 0.517601509369888 bayes_pls_golite062009
active transmembrane transporter activity 0.511311810386796 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.510137962484563 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.476924701765357 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.473395661531507 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.473285892250811 bayes_pls_golite062009
catalytic activity 0.276917867171685 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.242742762516199 bayes_pls_golite062009
pyrophosphatase activity 0.201337507209354 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.191294406773539 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.188721983770471 bayes_pls_golite062009
ATPase activity, coupled 0.110491424400621 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle