YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351091, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351091, gi|....

Description	E-value	Query Range	Subject Range
gi\|117922416, gi... - gi\|78684438\|ref\|ZP_00849222.1\| ribonuclease, T2 family [Shewanella sp. ANA-3], gi\|78507770\|gb\|EAP212...	313.0	[0..1]	[384..1]
gi\|82496247, gi\|... - gi\|82496247\|ref\|ZP_00881817.1\| ribonuclease, T2 family [Shewanella sp. MR-4], gi\|82405821\|gb\|EAP4649...	307.0	[0..1]	[384..1]
gi\|78511392, gi\|... - gi\|78689235\|ref\|ZP_00853899.1\| ribonuclease, T2 family [Shewanella sp. MR-7], gi\|78511392\|gb\|EAP2475...	304.0	[0..1]	[384..1]
gi\|145566549, gi... - gi\|77813810\|ref\|ZP_00813083.1\| Ribonuclease T2 [Shewanella putrefaciens CN-32], gi\|77811316\|gb\|EAO95...	276.0	[0..15]	[380..21]
gi\|160862929, gi... - gi\|160877407\|ref\|YP_001556723.1\| ribonuclease T2 [Shewanella baltica OS195], gi\|160862929\|gb\|ABX5146...	271.0	[0..1]	[381..1]
gi\|120596971, gi... - gi\|82741168\|ref\|ZP_00903895.1\| ribonuclease, T2 family [Shewanella sp. W3-18-1], gi\|82721437\|gb\|EAP5...	270.0	[0..15]	[380..21]
gi\|125995620, gi... - gi\|68542499\|ref\|ZP_00582228.1\| Ribonuclease T2 [Shewanella baltica OS155], gi\|68519780\|gb\|EAN43304.1...	269.0	[0..1]	[381..1]
gi\|23102898 - ref\|ZP_00089393.1\| COG3719: Ribonuclease I [Azotobacter vinelandii] gi\|67156739, gi\|... - gi\|67156739\|ref\|ZP_00418236.1\| Ribonuclease T2 [Azotobacter vinelandii AvOP], gi\|67085928\|gb\|EAM0539...	250.0	[0..35]	[378..14]
gi\|12657467 - gi\|12657467\|emb\|CAC27785.1\| RNase S2 [Prunus avium]	233.0	[0..146]	[364..7]
gi\|48895411, gi\|... - gi\|71675650\|ref\|ZP_00673394.1\| Ribonuclease T2 [Trichodesmium erythraeum IMS101], gi\|71671118\|gb\|EAO...	232.0	[0..38]	[382..19]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALFSLPIR KRDSQPVTLC RHLQGVLGLL LIGLTPITTV AAPATGEFIA NKRCELFQSK  60
   61 NKQTNPDDWQ SNIGERYPVA ELLGNSANPD WLRVRTNAIT SPLRWIKGDC GQYHASVAAE 120
  121 TYQPSSSGKP VQTTTASDIN AINSESLKEH GTSEKRQGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCQIEDNYDS HVLALSWQST FCELYGSRKA ECRALRQTTD APQWQHFSLH GLWPNRQQCG  60
   61 TRYGFCSSVK QQPSDFCDYP EVPLNASVQK NLEEVMPSAR YGTCLERHEW WKHGTCRDQD 120
  121 PNDYFLLATQ LTQEVNASVW VKEFIHQRIG KKVTQKELNQ SFDTSFGQGA HTKVTLDCAK 180
  181 GLLNEIRINL PQEIKLSDSI PSLLAKAPKA KKTNCPDPLL IDMPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	1iybA
Description:	Crystal Structure of the Nicotiana glutinosa Ribonuclease NW
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	3.44118209547515	bayes_pls_golite062009
endoribonuclease activity	2.304469131639	bayes_pls_golite062009
hydrolase activity	1.22739012618202	bayes_pls_golite062009
catalytic activity	0.991305974398186	bayes_pls_golite062009
endonuclease activity	0.880107148932689	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.81513220820228	bayes_pls_golite062009
nuclease activity	0.282205454426451	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: