| Protein: | gi|24351091, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 384 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351091, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
313.0 | [0..1] | [384..1] |
|
|
307.0 | [0..1] | [384..1] |
|
|
304.0 | [0..1] | [384..1] |
|
|
276.0 | [0..15] | [380..21] |
|
|
271.0 | [0..1] | [381..1] |
|
|
270.0 | [0..15] | [380..21] |
|
|
269.0 | [0..1] | [381..1] |
|
|
250.0 | [0..35] | [378..14] |
|
|
233.0 | [0..146] | [364..7] |
|
|
232.0 | [0..38] | [382..19] |
|
Region A: Residues: [1-159] |
1 11 21 31 41 51
| | | | | |
1 MTALFSLPIR KRDSQPVTLC RHLQGVLGLL LIGLTPITTV AAPATGEFIA NKRCELFQSK 60
61 NKQTNPDDWQ SNIGERYPVA ELLGNSANPD WLRVRTNAIT SPLRWIKGDC GQYHASVAAE 120
121 TYQPSSSGKP VQTTTASDIN AINSESLKEH GTSEKRQGN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.211 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [160-384] |
1 11 21 31 41 51
| | | | | |
1 LCQIEDNYDS HVLALSWQST FCELYGSRKA ECRALRQTTD APQWQHFSLH GLWPNRQQCG 60
61 TRYGFCSSVK QQPSDFCDYP EVPLNASVQK NLEEVMPSAR YGTCLERHEW WKHGTCRDQD 120
121 PNDYFLLATQ LTQEVNASVW VKEFIHQRIG KKVTQKELNQ SFDTSFGQGA HTKVTLDCAK 180
181 GLLNEIRINL PQEIKLSDSI PSLLAKAPKA KKTNCPDPLL IDMPN
|
| Detection Method: | |
| Confidence: | 55.39794 |
| Match: | 1iybA |
| Description: | Crystal Structure of the Nicotiana glutinosa Ribonuclease NW |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ribonuclease activity | 3.44118209547515 | bayes_pls_golite062009 |
| endoribonuclease activity | 2.304469131639 | bayes_pls_golite062009 |
| hydrolase activity | 1.22739012618202 | bayes_pls_golite062009 |
| catalytic activity | 0.991305974398186 | bayes_pls_golite062009 |
| endonuclease activity | 0.880107148932689 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.81513220820228 | bayes_pls_golite062009 |
| nuclease activity | 0.282205454426451 | bayes_pls_golite062009 |
