YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350893, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350893, gi|....

Description	E-value	Query Range	Subject Range
SO9020 - ISSod11 transposase (SO0819,SO1282,SO1394,SO1436,SO1456,SO1950,SO2187,SO2210,SO2819,SO3321) gi\|24348904, gi\|... - gi\|24374832\|ref\|NP_718875.1\| ISSod11, transposase [Shewanella oneidensis MR-1], gi\|24374350\|ref\|NP_7...	335.0	[0..1]	[306..1]
gi\|91789026, gi\|... - gi\|91789026\|ref\|YP_549978.1\| hypothetical protein Bpro_3166 [Polaromonas sp. JS666], gi\|91698251\|gb\|...	290.0	[0..13]	[305..29]
gi\|121595125, gi... - gi\|121595125\|ref\|YP_987021.1\| hypothetical protein Ajs_2804 [Acidovorax sp. JS42], gi\|120607205\|gb\|A...	276.0	[0..1]	[305..1]
gi\|190571992, gi... - gi\|190571992\|ref\|YP_001967720.1\| hypothetical protein [Comamonas sp. CNB-1], gi\|119943730\|gb\|ABM0624...	273.0	[0..10]	[305..6]
gi\|21231554, gi\|... - gi\|21231554\|ref\|NP_637471.1\| IS1595 transposase [Xanthomonas campestris pv. campestris str. ATCC 339...	269.0	[0..1]	[288..1]
gi\|84625694, gi\|... - gi\|84625694\|ref\|YP_453066.1\| ISXo5 transposase [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|84369...	269.0	[0..1]	[288..12]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSSYLLKA GVDYPTNWDE FVDWFHDEQS CTSYLYALRW PNGFICPSCS SHQSPYQLSN  60
   61 GKLKCHACRF QCSVTSSTLF DKTRTPMKSW FAAVWFITNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	2ctdA
Description:	Solution structure of two zf-C2H2 domains from human Zinc finger protein 512
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.30574976114218	bayes_pls_golite062009
DNA binding	1.22781671732945	bayes_pls_golite062009
transcription regulator activity	1.11045188903413	bayes_pls_golite062009
binding	1.0649612944442	bayes_pls_golite062009
transposase activity	0.982392863753235	bayes_pls_golite062009
catalytic activity	0.633447548613749	bayes_pls_golite062009
transcription factor activity	0.291300043056865	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [101-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNGVSALGVQ RLLGLGSYQT AWSLMHKLRY AMVDPERDKL SGIVEVDETL IGGVIPKSSI  60
   61 KN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [163-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQGKRKAIVL VAVELLSPSG FGRIRLRQVE SATKEHIHQF IQDVIEPGST ICSDGSQAYK  60
   61 QIDKKGYKHN RMVHLGSSVP AHETMAGVHR VSSLCKRWLL GTYQGAVKAK QLDYYLDEFT 120
  121 FRFNRRKSDS RGLLFYRLLE QAVR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: