| Protein: | gi|24350893, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 306 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350893, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
335.0 | [0..1] | [306..1] |
|
|
290.0 | [0..13] | [305..29] |
|
|
276.0 | [0..1] | [305..1] |
|
|
273.0 | [0..10] | [305..6] |
|
|
269.0 | [0..1] | [288..1] |
|
|
269.0 | [0..1] | [288..12] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MKTSSYLLKA GVDYPTNWDE FVDWFHDEQS CTSYLYALRW PNGFICPSCS SHQSPYQLSN 60
61 GKLKCHACRF QCSVTSSTLF DKTRTPMKSW FAAVWFITNQ
|
| Detection Method: |  |
| Confidence: | 1.1 |
| Match: | 2ctdA |
| Description: | Solution structure of two zf-C2H2 domains from human Zinc finger protein 512 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 1.30574976114218 | bayes_pls_golite062009 |
| DNA binding | 1.22781671732945 | bayes_pls_golite062009 |
| transcription regulator activity | 1.11045188903413 | bayes_pls_golite062009 |
| binding | 1.0649612944442 | bayes_pls_golite062009 |
| transposase activity | 0.982392863753235 | bayes_pls_golite062009 |
| catalytic activity | 0.633447548613749 | bayes_pls_golite062009 |
| transcription factor activity | 0.291300043056865 | bayes_pls_golite062009 |
|
Region A: Residues: [101-162] |
1 11 21 31 41 51
| | | | | |
1 KNGVSALGVQ RLLGLGSYQT AWSLMHKLRY AMVDPERDKL SGIVEVDETL IGGVIPKSSI 60
61 KN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [163-306] |
1 11 21 31 41 51
| | | | | |
1 QQGKRKAIVL VAVELLSPSG FGRIRLRQVE SATKEHIHQF IQDVIEPGST ICSDGSQAYK 60
61 QIDKKGYKHN RMVHLGSSVP AHETMAGVHR VSSLCKRWLL GTYQGAVKAK QLDYYLDEFT 120
121 FRFNRRKSDS RGLLFYRLLE QAVR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.626 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.596 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.560 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.505 | N/A | N/A | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.484 | N/A | N/A | a.1.1 | Globin-like |
