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Protein Overview: gi|24350893, gi|...

General Information:
Name(s) found: gi|24375914 [NCBI NR]
gi|24373837 [NCBI NR]
gi|24350893 [NCBI NR]
gi|24348241 [NCBI NR]
Description(s) found:
Found 6 descriptions.
SHOW ALL
  • gi|24375914|ref|NP_719957.1| ISSod11, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24373837|ref|NP_717880.1| ISSod11, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350893|gb|AAN57401.1|AE015876_7 ISSod11, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348241|gb|AAN55324.1|AE015670_2 ISSod11, transposase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transposition, DNA-mediated [ISSLink to PubMed article]
    Molecular Function: transposase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSSYLLKA GVDYPTNWDE FVDWFHDEQS CTSYLYALRW PNGFICPSCS SHQSPYQLSN  60
   61 GKLKCHACRF QCSVTSSTLF DKTRTPMKSW FAAVWFITNQ KNGVSALGVQ RLLGLGSYQT 120
  121 AWSLMHKLRY AMVDPERDKL SGIVEVDETL IGGVIPKSSI KNQQGKRKAI VLVAVELLSP 180
  181 SGFGRIRLRQ VESATKEHIH QFIQDVIEPG STICSDGSQA YKQIDKKGYK HNRMVHLGSS 240
  241 VPAHETMAGV HRVSSLCKRW LLGTYQGAVK AKQLDYYLDE FTFRFNRRKS DSRGLLFYRL 300
  301 LEQAVR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] FFAS03 1.1 Solution structure of two zf-C2H2 domains from human Zinc finger protein 512
    2 View Details [101..162] MSA 3.165995 View MSA. No confident structure predictions are available.
    3 View Details [163..306] MSA 26.154996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  1.30574976114218 bayes_pls_golite062009
  • DNA binding
    		•  1.22781671732945 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.11045188903413 bayes_pls_golite062009
  • binding
    		•  1.0649612944442 bayes_pls_golite062009
  • transposase activity
    		•  0.982392863753235 bayes_pls_golite062009
  • catalytic activity
    		•  0.633447548613749 bayes_pls_golite062009
  • transcription factor activity
    		•  0.291300043056865 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle