YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375742, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375742, gi|....

Description	E-value	Query Range	Subject Range
gi\|127512199, gi... - gi\|78366488\|ref\|ZP_00836768.1\| Phage integrase [Shewanella sp. PV-4], gi\|78361533\|gb\|EAP03357.1\| Pha...	199.0	[0..1]	[293..8]
gi\|82496090, gi\|... - gi\|82496090\|ref\|ZP_00881661.1\| integrase, phage family [Shewanella sp. MR-4], gi\|82405894\|gb\|EAP4656...	198.0	[0..1]	[293..8]
gi\|75857323, gi\|... - gi\|75857323\|ref\|ZP_00764939.1\| COG0582: Integrase [Vibrio sp. Ex25], gi\|254228629\|ref\|ZP_04922053.1\|...	198.0	[0..1]	[293..8]
gi\|9655299, gi\|1... - gi\|9655299\|gb\|AAF94009.1\| integrase, phage family [Vibrio cholerae O1 biovar El Tor str. N16961], gi... gi\|1100883, gi\|4... - gi\|498253\|gb\|AAC44230.1\| integrase, gi\|13377568\|gb\|AAK20803.1\|AF325734_29 integrase [Vibrio cholerae... gi\|229344622, gi... - gi\|229517907\|ref\|ZP_04407351.1\| phage integrase [Vibrio cholerae RC9], gi\|229344622\|gb\|EEO09596.1\| p... gi\|498253, gi\|14... - gi\|498253\|gb\|AAC44230.1\| integrase, gi\|227117217\|ref\|YP_002819113.1\| integrase, phage family [Vibrio... gi\|121550043, gi... - gi\|121585680\|ref\|ZP_01675475.1\| integrase, phage family [Vibrio cholerae 2740-80], gi\|121550043\|gb\|E... gi\|153224615, gi... - gi\|153224615\|ref\|ZP_01954522.1\| integrase, phage family [Vibrio cholerae MAK 757], gi\|124117544\|gb\|E... gi\|121631470, gi... - gi\|121725988\|ref\|ZP_01679287.1\| integrase, phage family [Vibrio cholerae V52], gi\|121631470\|gb\|EAX63... gi\|153818037, gi... - gi\|153818037\|ref\|ZP_01970704.1\| integrase, phage family [Vibrio cholerae NCTC 8457], gi\|126511383\|gb... gi\|254843689, gi... - gi\|254847984\|ref\|ZP_05237334.1\| integrase [Vibrio cholerae MO10], gi\|254843689\|gb\|EET22103.1\| integr... gi\|227081023, gi... - gi\|227081023\|ref\|YP_002809574.1\| integrase, phage family [Vibrio cholerae M66-2], gi\|227008911\|gb\|AC... gi\|229350751, gi... - gi\|229510786\|ref\|ZP_04400265.1\| phage integrase [Vibrio cholerae B33], gi\|229350751\|gb\|EEO15692.1\| p... gi\|229357766, gi... - gi\|229505543\|ref\|ZP_04395053.1\| phage integrase [Vibrio cholerae BX 330286], gi\|229357766\|gb\|EEO2268...	198.0	[0..1]	[293..8]
tr\|D7HF28\|D7HF28... - Integrase OS=Vibrio cholerae RC385 GN=VCRC385_00574 PE=4 SV=1 gi\|150421294, gi... - gi\|75822961\|ref\|ZP_00752506.1\| COG0582: Integrase [Vibrio cholerae RC385], gi\|254222126\|ref\|ZP_04915...	196.0	[0..1]	[293..8]
gi\|67156550 - gi\|67156550\|ref\|ZP_00418143.1\| Phage integrase [Azotobacter vinelandii AvOP] gi\|67156550, gi\|... - gi\|67156550\|ref\|ZP_00418143.1\| Phage integrase [Azotobacter vinelandii AvOP], gi\|67086309\|gb\|EAM0577...	195.0	[0..1]	[293..3]
gi\|24373045, gi\|... - gi\|24373045\|ref\|NP_717087.1\| phage integrase family site specific recombinase [Shewanella oneidensis... SO1471 - site-specific recombinase phage integrase family	194.0	[0..1]	[293..8]
gi\|190902162, gi... - gi\|75229050\|ref\|ZP_00715634.1\| COG0582: Integrase [Escherichia coli B7A], gi\|191167819\|ref\|ZP_030296...	194.0	[0..1]	[292..3]
gi\|75194504, gi\|... - gi\|75194504\|ref\|ZP_00704574.1\| COG0582: Integrase [Escherichia coli HS], gi\|157159783\|ref\|YP_0014571...	193.0	[0..1]	[290..3]
gi\|28872456, gi\|... - gi\|28872456\|ref\|NP_795075.1\| phage integrase family site specific recombinase [Pseudomonas syringae ... tr\|Q87UF4\|Q87UF4... - Site-specific recombinase, phage integrase family OS=Pseudomonas syringae pv. tomato (strain DC3000)...	193.0	[0..1]	[290..3]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDKQIKAFI RSKEVGRKAV SDGLYIRVQT AGIASWEIRY SVNGKRRFMT LEGGQYPHMS  60
   61 LADARAAAAI ARQSIIKGSD PLAERAKLSE EKIHTVDDLF DDWFVDAKKQ LKHSEIPLRI 120
  121 YTKEVKPYIG RLQIKDVTPL DIRNIIQKVA HSNRPCIAND TLLHCKKLFA HACKLGLKDG 180
  181 NPASHFKPAD AGGAEKSRER ALSVKELEFF FDVARKNISS FGRDNYLAAA LLVSLGIRKG 240
  241 ELFKLTWREV NLNLKIWKLP QPRTKSSVAI SIPLPDTVVS WFEELKIRGC GSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1z1gA
Description:	Crystal structure of a lambda integrase tetramer bound to a Holliday junction
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	4.99325011803106	bayes_pls_golite062009
catalytic activity	2.22520758916604	bayes_pls_golite062009
integrase activity	1.98780702210031	bayes_pls_golite062009
structure-specific DNA binding	0.11292854906722	bayes_pls_golite062009
DNA binding	0.10970863758177	bayes_pls_golite062009
nucleic acid binding	0.06580979261817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: