YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24375742, gi|...

General Information:
Name(s) found: gi|24375742 [NCBI NR]
gi|24350683 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24375742|ref|NP_719785.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350683|gb|AAN57229.1|AE015858_10 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 293 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: site-specific recombinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDKQIKAFI RSKEVGRKAV SDGLYIRVQT AGIASWEIRY SVNGKRRFMT LEGGQYPHMS  60
   61 LADARAAAAI ARQSIIKGSD PLAERAKLSE EKIHTVDDLF DDWFVDAKKQ LKHSEIPLRI 120
  121 YTKEVKPYIG RLQIKDVTPL DIRNIIQKVA HSNRPCIAND TLLHCKKLFA HACKLGLKDG 180
  181 NPASHFKPAD AGGAEKSRER ALSVKELEFF FDVARKNISS FGRDNYLAAA LLVSLGIRKG 240
  241 ELFKLTWREV NLNLKIWKLP QPRTKSSVAI SIPLPDTVVS WFEELKIRGC GSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..293] PSI-BLAST 19.30103 Crystal structure of a lambda integrase tetramer bound to a Holliday junction

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • site-specific recombinase activity
    		•  4.99325011803106 bayes_pls_golite062009
  • catalytic activity
    		•  2.22520758916604 bayes_pls_golite062009
  • integrase activity
    		•  1.98780702210031 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.11292854906722 bayes_pls_golite062009
  • DNA binding
    		•  0.10970863758177 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.06580979261817 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle